RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 TTLQ8NG68 377 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 OR6M1Q8NGM8 313 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 DAPL1A0PJW8 107 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 DCLK1O15075 740 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 NOS2P35228 1153 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 AVPR1BP47901 424 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 FAM189BP81408 668 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 ACSM2AQ08AH3 577 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 NTRK2Q16620 822 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 KYAT1Q16773 422 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 ACSM2BQ68CK6 577 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 ARMC6Q6NXE6 501 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 SLC16A13Q7RTY0 426 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 PRO1933Q9H354 126 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 NXF3Q9H4D5 531 aaKnown RBP4.9□□□□□ -1.62
VPS13D-214ENST00000620676 RPS6KB2Q9UBS0 482 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 FAM227AF5H4B4 570 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 IVDP26440 423 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 CTNNB1P35222 781 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 HARS2P49590 506 aaKnown RBP4.9□□□□□ -1.62
VPS13D-214ENST00000620676 MAD2L1Q13257 205 aaPredicted RBP4.9□□□□□ -1.62
VPS13D-214ENST00000620676 OXA1LQ15070 435 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 OR51J1Q9H342 316 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 REEP4Q9H6H4 257 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 AGPAT4Q9NRZ5 378 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 DUS2Q9NX74 493 aaKnown RBP4.9□□□□□ -1.62
VPS13D-214ENST00000620676 POLR1CO15160 346 aaPredicted RBP4.9□□□□□ -1.62
VPS13D-214ENST00000620676 CREG1O75629 220 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 GBAP04062 536 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 JMJD7P0C870 316 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 P2RX3P56373 397 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 USB1Q9BQ65 265 aaKnown RBP4.9□□□□□ -1.62
VPS13D-214ENST00000620676 PLA2G12BQ9BX93 195 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 TUBB1Q9H4B7 451 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 JUNP05412 331 aaKnown RBP4.9□□□□□ -1.62
VPS13D-214ENST00000620676 CCR6P51684 374 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 ARSFP54793 590 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 WNT3AP56704 352 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 FCN2Q15485 313 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 SLC5A12Q1EHB4 618 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 VMACQ2NL98 169 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 BORAQ6PGQ7 559 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 MFSD8Q8NHS3 518 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 POM121Q96HA1 1249 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 ASB2Q96Q27 587 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 CREBZFQ9NS37 354 aa4.9□□□□□ -1.62
VPS13D-214ENST00000620676 NPHS1O60500 1241 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ADORA3P0DMS8 318 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ERP29P30040 261 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 NTSP30990 170 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GKP32189 559 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 TPMTP51580 245 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 MLLT1Q03111 559 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ZNF169Q14929 603 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 INSCQ1MX18 579 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ROPN1LQ96C74 230 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 RPRD1AQ96P16 312 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 MROQ9BYG7 248 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 SLC22A11Q9NSA0 550 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ACSL5Q9ULC5 683 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 TEX264Q9Y6I9 313 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 CPS1P31327 1500 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 CEP170BQ9Y4F5 1589 aaPredicted RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 CLTCL1P53675 1640 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 QRICH2Q9H0J4 1663 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 SCGB1D1O95968 90 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 VAMP1P23763 118 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GDF5P43026 501 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 MAGEB1P43366 347 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 FBXO43Q4G163 708 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 WSCD1Q658N2 575 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 FBXO17Q96EF6 278 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 SLC39A13Q96H72 371 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 RIT2Q99578 217 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 EIF5A2Q9GZV4 153 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 HOXD1Q9GZZ0 328 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 POLR2J3Q9H1A7 115 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 TMEM231Q9H6L2 316 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 STX11O75558 287 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 G6PDP11413 515 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 RBM39Q14498 530 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GDPD3Q7L5L3 318 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 FBXW5Q969U6 566 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GPR21Q99679 349 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 MTMR10Q9NXD2 777 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 RIMS3Q9UJD0 308 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 LRFN2Q9ULH4 789 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 STX16O14662 325 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 TULP3O75386 442 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 ALDOAP04075 364 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 IFNA6P05013 189 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GJA1P17302 382 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 DSC1Q08554 894 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 SELPLGQ14242 412 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GTF2IRD2BQ6EKJ0 949 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 GTF2IRD2Q86UP8 949 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 PYURFQ96I23 114 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 MTERF1Q99551 399 aaKnown RBP4.9□□□□□ -1.63
VPS13D-214ENST00000620676 NCOR1O75376 2440 aa4.9□□□□□ -1.63
VPS13D-214ENST00000620676 EEF1E1-BLOC1S5C9J1V9 151 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms