RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 KXD1Q9BQD3 176 aa14.03□□□□□ -0.16
SHROOM1-208ENST00000617339 SLC6A13Q9NSD5 602 aa14.03□□□□□ -0.16
SHROOM1-208ENST00000617339 LEF1Q9UJU2 399 aaPredicted RBP14.03□□□□□ -0.16
SHROOM1-208ENST00000617339 OTOL1A6NHN0 477 aaPredicted RBP14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 HS6ST1O60243 411 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 HTR1AP08908 422 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 CYP4B1P13584 511 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 SPNP16150 400 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 PBX2P40425 430 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 POLR2LP62875 67 aaKnown RBP14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 TRAF3Q13114 568 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 CAMK2BQ13554 666 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 CTU2Q2VPK5 515 aaKnown RBP14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 SPESP1Q6UW49 350 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 TBC1D21Q8IYX1 336 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 FAM162AQ96A26 154 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 DMRTB1Q96MA1 342 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 NSMCE2Q96MF7 247 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 ZNF641Q96N77 438 aaPredicted RBP14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 HOPXQ9BPY8 73 aaPredicted RBP14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 PSD2Q9BQI7 771 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 C6orf62Q9GZU0 229 aaPredicted RBP14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 ZDHHC3Q9NYG2 299 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 PCDHGA11Q9Y5H2 935 aa14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 TNPO3Q9Y5L0 923 aaKnown RBP14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 RP1L1Q8IWN7 2480 aaPredicted RBP14.02□□□□□ -0.16
SHROOM1-208ENST00000617339 MICAL3Q7RTP6 2002 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 GPIP06744 558 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 FMO3P31513 532 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 GPR1P46091 355 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 GNPDA1P46926 289 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 CLCN4P51793 760 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 GP2P55259 537 aaKnown RBP14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 MRPS15P82914 257 aaKnown RBP14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 IL5RAQ01344 420 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 ERAP2Q6P179 960 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 TTC23LQ6PF05 361 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 LSRQ86X29 649 aaPredicted RBP14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 ZNF555Q8NEP9 628 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 OSCP1Q8WVF1 389 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 NODALQ96S42 347 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 NEK6Q9HC98 313 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 THG1LQ9NWX6 298 aaKnown RBP14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 ENPP5Q9UJA9 477 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 TMPRSS11EQ9UL52 423 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 PDZK1P1A8MUH7 402 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 MYO1GB0I1T2 1018 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 IFRD1O00458 451 aaPredicted RBP14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 CDH1P12830 882 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 ATP1B2P14415 290 aaPredicted RBP14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 GSTM2P28161 218 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 MTHFRP42898 656 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 PHC1P78364 1004 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 DGUOKQ16854 277 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 ZXDCQ2QGD7 858 aaPredicted RBP14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 C6orf141Q5SZD1 244 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 PLD3Q8IV08 490 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 FKBP10Q96AY3 582 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 EFHD2Q96C19 240 aaPredicted RBP14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 APIPQ96GX9 242 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 IL17FQ96PD4 163 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 INPP5KQ9BT40 448 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 SH3BP4Q9P0V3 963 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 DPP7Q9UHL4 492 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 IFT52Q9Y366 437 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 ZDBF2Q9HCK1 2354 aa14.02□□□□□ -0.17
SHROOM1-208ENST00000617339 STX16O14662 325 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 RGS14O43566 566 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 IDH3BO43837 385 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 CLDN9O95484 217 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 CTSLP07711 333 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 GDI1P31150 447 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 CD47Q08722 323 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 GALNT1Q10472 559 aaPredicted RBP14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 DAG1Q14118 895 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 CTF1Q16619 201 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 CACHD1Q5VU97 1274 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 OR4F3Q6IEY1 312 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 NEK5Q6P3R8 708 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 USP51Q70EK9 711 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 GALNT5Q7Z7M9 940 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 ADIPOR2Q86V24 386 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 NXPE3Q969Y0 559 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 FOPNLQ96NB1 174 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 ZNF382Q96SR6 550 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 NKX2-4Q9H2Z4 354 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 POPDC3Q9HBV1 291 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 ERVW-1Q9UQF0 538 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 CAB39Q9Y376 341 aaPredicted RBP14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 GNG14A0A1W2PPG7 69 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 KRT8P05787 483 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 RACK1P63244 317 aaKnown RBP14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 LRIT3Q3SXY7 679 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 CYP27C1Q4G0S4 372 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 MCOLN3Q8TDD5 553 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 S100ZQ8WXG8 99 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 TMEM125Q96AQ2 219 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 LRRC3Q9BY71 257 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 GPSM3Q9Y4H4 160 aa14.01□□□□□ -0.17
SHROOM1-208ENST00000617339 A0A0G2JN53 185 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms