RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CCDC25Q86WR0 208 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 C17orf64Q86WR6 236 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 PLD3Q8IV08 490 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 TMEM151BQ8IW70 566 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 NKAPQ8N5F7 415 aaKnown RBP14.4□□□□□ -0.1
TRIM28-205ENST00000595028 TMEM102Q8N9M5 508 aaPredicted RBP14.4□□□□□ -0.1
TRIM28-205ENST00000595028 RERGQ96A58 199 aaPredicted RBP14.4□□□□□ -0.1
TRIM28-205ENST00000595028 PTERQ96BW5 349 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 PRAP1Q96NZ9 151 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 TRIM54Q9BYV2 358 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 EPN3Q9H201 632 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 POPDC3Q9HBV1 291 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 TMEM184CQ9NVA4 438 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 NXT1Q9UKK6 140 aaKnown RBP14.4□□□□□ -0.1
TRIM28-205ENST00000595028 NOVA2Q9UNW9 492 aaKnown RBP14.4□□□□□ -0.1
TRIM28-205ENST00000595028 LRBAP50851 2863 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 ABCA12Q86UK0 2595 aa14.4□□□□□ -0.1
TRIM28-205ENST00000595028 DOPEY1Q5JWR5 2465 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 ESYT3A0FGR9 886 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 BLACEA4D250 179 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 NPEPPSL1A6NEC2 478 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 CXorf49A8MYA2 514 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-205ENST00000595028 CEACAM4O75871 244 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 PDGFAP04085 211 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 GPX6P59796 221 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 FOXK1P85037 733 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 ZXDCQ2QGD7 858 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-205ENST00000595028 GARNL3Q5VVW2 1013 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 CAPN13Q6MZZ7 669 aaPredicted RBP14.39□□□□□ -0.11
TRIM28-205ENST00000595028 ASB18Q6ZVZ8 466 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 CYS1Q717R9 158 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 MED25Q71SY5 747 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 CEP97Q8IW35 865 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 ARHGEF39Q8N4T4 335 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 OR56A3Q8NH54 315 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 ATL1Q8WXF7 558 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 ANKRD7Q92527 254 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 ALKBH8Q96BT7 664 aaKnown RBP14.39□□□□□ -0.11
TRIM28-205ENST00000595028 FBXL8Q96CD0 374 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 MVB12AQ96EY5 273 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 RBBP8Q99708 897 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 CPNE1Q99829 537 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 SLC25A23Q9BV35 468 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 ZNF304Q9HCX3 659 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 TXNDC16Q9P2K2 825 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 ANAPC2Q9UJX6 822 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 MAU2Q9Y6X3 613 aa14.39□□□□□ -0.11
TRIM28-205ENST00000595028 TXNDC9O14530 226 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 WISP3O95389 354 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-205ENST00000595028 CDH1P12830 882 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 FBLP22087 321 aaKnown RBP14.38□□□□□ -0.11
TRIM28-205ENST00000595028 GP5P40197 560 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 MAGEA4P43358 317 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 CCL11P51671 97 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 PGDP52209 483 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 RPS15AP62244 130 aaKnown RBP14.38□□□□□ -0.11
TRIM28-205ENST00000595028 CSNK1G2P78368 415 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 SLC7A5Q01650 507 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 POU4F1Q01851 419 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 DSG2Q14126 1118 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 DCAF10Q5QP82 559 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 C3orf62Q6ZUJ4 267 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 VN1R4Q7Z5H5 301 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 ADAMTSL2Q86TH1 951 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 FAM26EQ8N5C1 309 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 ANKRD49Q8WVL7 239 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 ZNF592Q92610 1267 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 PYCR2Q96C36 320 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 GPR22Q99680 433 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 HAUS8Q9BT25 410 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 LRRC1Q9BTT6 524 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 SOX17Q9H6I2 414 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-205ENST00000595028 GPAMQ9HCL2 828 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 MLXIPLQ9NP71 852 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 P4HTMQ9NXG6 502 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 CDC14AQ9UNH5 594 aa14.38□□□□□ -0.11
TRIM28-205ENST00000595028 KCNE1BA0A087WTH5 132 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 VSTM2BA6NLU5 285 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 CDC7O00311 574 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 PEX12O00623 359 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 PRPF4O43172 522 aaKnown RBP eCLIP14.37□□□□□ -0.11
TRIM28-205ENST00000595028 GUCA1CO95843 209 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 IGHEP01854 428 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 MMP11P24347 488 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 STX2P32856 288 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 SLC12A2P55011 1212 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 KLRB1Q12918 225 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 SHISA6Q6ZSJ9 500 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 CTAGE3PQ8IX95 158 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 NACC2Q96BF6 587 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 THAP11Q96EK4 314 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 TSPAN17Q96FV3 270 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 FER1L6-AS2Q96M78 137 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 OR4K3Q96R72 315 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 DRC3Q9H069 523 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 CAB39LQ9H9S4 337 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 LRRC4CQ9HCJ2 640 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 ZDHHC18Q9NUE0 388 aa14.37□□□□□ -0.11
TRIM28-205ENST00000595028 ZNF282Q9UDV7 671 aaPredicted RBP14.37□□□□□ -0.11
TRIM28-205ENST00000595028 G3BP2Q9UN86 482 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms