RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DCDC1P59894 354 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 EXT1Q16394 746 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 EIPR1Q53HC9 387 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 HYIQ5T013 277 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 GARNL3Q5VVW2 1013 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 TMUB2Q71RG4 321 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 SLC24A5Q71RS6 500 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 GPC2Q8N158 579 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 C11orf45Q8TAV5 145 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 NSMAFQ92636 917 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 TMCO6Q96DC7 493 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 C1orf147Q96MC9 270 aaPredicted RBP2.28□□□□□ -2.04
VPS35-207ENST00000568191 BTBD9Q96Q07 612 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 CCDC3Q9BQI4 270 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 KLHL4Q9C0H6 718 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 CDH20Q9HBT6 801 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 GSN-AS1Q9NRJ2 163 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 TXNDC16Q9P2K2 825 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 PRO0461Q9UI25 63 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 RNF150Q9ULK6 438 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 CELA1Q9UNI1 258 aa2.28□□□□□ -2.04
VPS35-207ENST00000568191 RNF123Q5XPI4 1314 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 NPHP3Q7Z494 1330 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 TRBV5-5A0A0J9YX44 114 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 A0A1W2PPM1 405 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 A0A1W2PPQ1 181 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 ANKRD18BA2A2Z9 1011 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 GLOD5A6NK44 160 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 SHISA9B4DS77 424 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 PDHXO00330 501 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 SH3BGRLO75368 114 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 SLCO2B1O94956 709 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 ABCB1P08183 1280 aaPredicted RBP2.27□□□□□ -2.05
VPS35-207ENST00000568191 DUX4L4P0CJ87 422 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 PCP11498 1178 aaKnown RBP2.27□□□□□ -2.05
VPS35-207ENST00000568191 PRG2P13727 222 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 AZGP1P25311 298 aaKnown RBP2.27□□□□□ -2.05
VPS35-207ENST00000568191 PCGF2P35227 344 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 LHX1P48742 406 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 EIF5P55010 431 aaKnown RBP2.27□□□□□ -2.05
VPS35-207ENST00000568191 CUL4AQ13619 759 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 SPECC1Q5M775 1068 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 LCE3AQ5TA76 89 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 FHL5Q5TD97 284 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 FAM166AQ6J272 317 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 RCOR2Q8IZ40 523 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 OR10Q1Q8NGQ4 319 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 CFAP61Q8NHU2 1237 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 KCNE4Q8WWG9 221 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 PIK3R3Q92569 461 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 TSACCQ96A04 125 aaPredicted RBP2.27□□□□□ -2.05
VPS35-207ENST00000568191 SERAC1Q96JX3 654 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 CNOT6LQ96LI5 555 aaKnown RBP2.27□□□□□ -2.05
VPS35-207ENST00000568191 C2orf48Q96LS8 159 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 ZNF577Q9BSK1 485 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 NOL11Q9H8H0 719 aaKnown RBP2.27□□□□□ -2.05
VPS35-207ENST00000568191 MYNNQ9NPC7 610 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 FRMD4AQ9P2Q2 1039 aaPredicted RBP2.27□□□□□ -2.05
VPS35-207ENST00000568191 CRNNQ9UBG3 495 aaPredicted RBP2.27□□□□□ -2.05
VPS35-207ENST00000568191 ZNF107Q9UII5 783 aaPredicted RBP2.27□□□□□ -2.05
VPS35-207ENST00000568191 RPS6KA6Q9UK32 745 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 VSIG4Q9Y279 399 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 WDR83OSQ9Y284 106 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 RPS6KL1Q9Y6S9 549 aa2.27□□□□□ -2.05
VPS35-207ENST00000568191 IL16Q14005 1332 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 NPIPB9F8W1W9 429 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 SNAP91O60641 907 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 MYOGP15173 224 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 SFTPDP35247 375 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 CLCN4P51793 760 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 RIDAP52758 137 aaKnown RBP2.26□□□□□ -2.05
VPS35-207ENST00000568191 FKBP3Q00688 224 aaKnown RBP2.26□□□□□ -2.05
VPS35-207ENST00000568191 STK4Q13043 487 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 KIAA0141Q14154 515 aaPredicted RBP2.26□□□□□ -2.05
VPS35-207ENST00000568191 PTPRCAPQ14761 206 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 ZNF146Q15072 292 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 MAPRE1Q15691 268 aaKnown RBP2.26□□□□□ -2.05
VPS35-207ENST00000568191 C3AR1Q16581 482 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 GPR33Q49SQ1 333 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 BMP2KLQ5H9B9 411 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 C6orf163Q5TEZ5 329 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 Q8N7P7 452 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 TCEANCQ8N8B7 351 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 RASGEF1AQ8N9B8 481 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 SPPL2AQ8TCT8 520 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 SECISBP2LQ93073 1101 aaKnown RBP2.26□□□□□ -2.05
VPS35-207ENST00000568191 PGM2Q96G03 612 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 LINC00615Q96LM1 132 aaPredicted RBP2.26□□□□□ -2.05
VPS35-207ENST00000568191 GCNAQ96QF7 691 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 CCDC106Q9BWC9 280 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 SDCBP2Q9H190 292 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 ANKZF1Q9H8Y5 726 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 RNF121Q9H920 327 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 STAU2Q9NUL3 570 aaKnown RBP eCLIP2.26□□□□□ -2.05
VPS35-207ENST00000568191 TBC1D13Q9NVG8 400 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 HAO2Q9NYQ3 351 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 HACD3Q9P035 362 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 THAP10Q9P2Z0 257 aaPredicted RBP2.26□□□□□ -2.05
VPS35-207ENST00000568191 CLIP2Q9UDT6 1046 aa2.26□□□□□ -2.05
VPS35-207ENST00000568191 MAGED1Q9Y5V3 778 aaPredicted RBP2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms