RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CDC14AQ9UNH5 594 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 B3GNT3Q9Y2A9 372 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 CSAG2Q9Y5P2 127 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 USP9XQ93008 2570 aaPredicted RBP14.13□□□□□ -0.15
CLN3-213ENST00000565047 PTPN13Q12923 2485 aa14.13□□□□□ -0.15
CLN3-213ENST00000565047 DOCK10Q96BY6 2186 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 A0A0A6YYC8 382 aaPredicted RBP14.12□□□□□ -0.15
CLN3-213ENST00000565047 I3L1I5 382 aaPredicted RBP14.12□□□□□ -0.15
CLN3-213ENST00000565047 FFAR3O14843 346 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 GPR42O15529 346 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 FBLP22087 321 aaKnown RBP14.12□□□□□ -0.15
CLN3-213ENST00000565047 ARL4CP56559 192 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 IL2P60568 153 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 PPP1R3AQ16821 1122 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 TMEM214Q6NUQ4 689 aaKnown RBP14.12□□□□□ -0.15
CLN3-213ENST00000565047 LCTLQ6UWM7 567 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 SBSNQ6UWP8 590 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 ZC3HC1Q86WB0 502 aaKnown RBP14.12□□□□□ -0.15
CLN3-213ENST00000565047 MYO1HQ8N1T3 1032 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 ABHD11Q8NFV4 315 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 OR4K1Q8NGD4 311 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 OR56A3Q8NH54 315 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 GABPB2Q8TAK5 448 aaPredicted RBP14.12□□□□□ -0.15
CLN3-213ENST00000565047 C19orf60Q96EN9 201 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 CFAP36Q96G28 342 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 KRT12Q99456 494 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 PCBD2Q9H0N5 130 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 C3orf18Q9UK00 162 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 SNX24Q9Y343 169 aa14.12□□□□□ -0.15
CLN3-213ENST00000565047 LOC102723996A0A087X1L8 192 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 EFCAB8A8MWE9 144 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 IDSB3KWA1 339 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 TCP11X1B4DZS4 312 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 TXNDC9O14530 226 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 KLHL41O60662 606 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 IPO13O94829 963 aaKnown RBP14.11□□□□□ -0.15
CLN3-213ENST00000565047 WISP3O95389 354 aaPredicted RBP14.11□□□□□ -0.15
CLN3-213ENST00000565047 HPP00738 406 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 C1QAP02745 245 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 ALPPP05187 535 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 COX6A1P12074 109 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 GNLYP22749 145 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 ITGA3P26006 1051 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 BCL6P41182 706 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 MRPS25P82663 173 aaKnown RBP14.11□□□□□ -0.15
CLN3-213ENST00000565047 OCA2Q04671 838 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 MGAT5Q09328 741 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 NAE1Q13564 534 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 RBBP7Q16576 425 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 SYT16Q17RD7 645 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 TUBB8Q3ZCM7 444 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 FAM45BPQ6NSW5 357 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 TMEM205Q6UW68 189 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 PRSS41Q7RTY9 318 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 CUZD1Q86UP6 607 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 ATCAYQ86WG3 371 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 ANKMY2Q8IV38 441 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 ZC3H7AQ8IWR0 971 aaKnown RBP14.11□□□□□ -0.15
CLN3-213ENST00000565047 PRSS58Q8IYP2 241 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 FAM26EQ8N5C1 309 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 AMER2Q8N7J2 671 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 FBXO36Q8NEA4 188 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 FAM45AQ8TCE6 357 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 PSMF1Q92530 271 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 RERGQ96A58 199 aaPredicted RBP14.11□□□□□ -0.15
CLN3-213ENST00000565047 C8orf44Q96CB5 159 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 SNRNP40Q96DI7 357 aaKnown RBP14.11□□□□□ -0.15
CLN3-213ENST00000565047 THAP11Q96EK4 314 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 MMABQ96EY8 250 aaPredicted RBP14.11□□□□□ -0.15
CLN3-213ENST00000565047 PSMG3-AS1Q96PY0 264 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 MACROD1Q9BQ69 325 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 TRIM31Q9BZY9 425 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 DRC3Q9H069 523 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 PPANQ9NQ55 473 aaKnown RBP14.11□□□□□ -0.15
CLN3-213ENST00000565047 SMYD2Q9NRG4 433 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 ABCF3Q9NUQ8 709 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 TRPC4Q9UBN4 977 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 PCDHGA10Q9Y5H3 936 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 LRRK2Q5S007 2527 aa14.11□□□□□ -0.15
CLN3-213ENST00000565047 PRRC2CQ9Y520 2896 aaKnown RBP14.11□□□□□ -0.15
CLN3-213ENST00000565047 FEZF1A0PJY2 475 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 H0YIG0 161 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 BMP10O95393 424 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 STATHP02808 62 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 ZNF37AP17032 561 aaPredicted RBP14.1□□□□□ -0.15
CLN3-213ENST00000565047 CCND1P24385 295 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 PAFAH1B1P43034 410 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 EMP2P54851 167 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 AP1S2P56377 157 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 TAS2R39P59534 338 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 RPS15AP62244 130 aaKnown RBP14.1□□□□□ -0.15
CLN3-213ENST00000565047 MAT1AQ00266 395 aaKnown RBP14.1□□□□□ -0.15
CLN3-213ENST00000565047 PDIA2Q13087 525 aaKnown RBP14.1□□□□□ -0.15
CLN3-213ENST00000565047 THEMIS2Q5TEJ8 643 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 DUPD1Q68J44 220 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 ADCK2Q7Z695 626 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 SLC26A11Q86WA9 606 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 C17orf64Q86WR6 236 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 PDSS2Q86YH6 399 aa14.1□□□□□ -0.15
CLN3-213ENST00000565047 PARP9Q8IXQ6 854 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms