RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 NSG1A0A0A6YYJ2 146 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 H0YIG0 161 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 HAT1O14929 419 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 SLC16A5O15375 505 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 P2RX6O15547 441 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 TTC4O95801 387 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 SYF2O95926 243 aaKnown RBP16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 C8GP07360 202 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 PRR35P0CG20 571 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 CXCR2P25025 360 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 SP140Q13342 867 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 TSTA3Q13630 321 aaPredicted RBP16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 CRYMQ14894 314 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 NDUFA9Q16795 377 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 VN1R4Q7Z5H5 301 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 GALNT7Q86SF2 657 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 SPNS2Q8IVW8 549 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 CNTN4Q8IWV2 1026 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 MCOLN3Q8TDD5 553 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 MMABQ96EY8 250 aaPredicted RBP16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 NAT9Q9BTE0 207 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 CCDC177Q9NQR7 707 aaPredicted RBP16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 RIC8BQ9NVN3 520 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 SNX12Q9UMY4 172 aa16.34■□□□□ 0.21
VPS9D1-203ENST00000563798 MDC1Q14676 2089 aaKnown RBP16.33■□□□□ 0.21
VPS9D1-203ENST00000563798 A0A0A6YYC8 382 aaPredicted RBP16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 GOLGA6L10A0A0M3HER8 536 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 H7BY64 318 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 I3L1I5 382 aaPredicted RBP16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 E2F3O00716 465 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 BMP10O95393 424 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 ANXA5P08758 320 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 GABRB3P28472 473 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 RPS15AP62244 130 aaKnown RBP16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 ELOAQ14241 798 aaKnown RBP16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 THEMIS2Q5TEJ8 643 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 KIAA0408Q6ZU52 694 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 ZC3H7AQ8IWR0 971 aaKnown RBP16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 SLC35F6Q8N357 371 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 GABPB2Q8TAK5 448 aaPredicted RBP16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 EEF1AKMT1Q8WVE0 214 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 FAR1Q8WVX9 515 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 TM4SF19Q96DZ7 209 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 PRAP1Q96NZ9 151 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 FAM129AQ9BZQ8 928 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 ZNF700Q9H0M5 742 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 IARS2Q9NSE4 1012 aaKnown RBP16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 TAS2R13Q9NYV9 303 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 TRMT6Q9UJA5 497 aaKnown RBP16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 PDE10AQ9Y233 779 aa16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 MRPS2Q9Y399 296 aaKnown RBP16.33■□□□□ 0.2
VPS9D1-203ENST00000563798 DNALI1O14645 258 aaPredicted RBP16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 NSA2O95478 260 aaKnown RBP16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 HEXBP07686 556 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 ICAM2P13598 275 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 EDN3P14138 238 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 CCND1P24385 295 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 IVDP26440 423 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 AVPR1BP47901 424 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 RGS4P49798 205 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 TBPL1P62380 186 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 AP2B1P63010 937 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 CSNK1G2P78368 415 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 SPANXN3Q5MJ09 141 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 LINC00696Q6ZRV3 163 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 ADCK2Q7Z695 626 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 PCGF5Q86SE9 256 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 PLD3Q8IV08 490 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 GRHL3Q8TE85 626 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 HAS2Q92819 552 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 IMMP1LQ96LU5 166 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 SGPP1Q9BX95 441 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 RNF32Q9H0A6 362 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 PARVBQ9HBI1 364 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 ADAMTS6Q9UKP5 1117 aa16.32■□□□□ 0.2
VPS9D1-203ENST00000563798 FFAR3O14843 346 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 GPR42O15529 346 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 AHSGP02765 367 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 EFNA3P52797 238 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 SNRPNP63162 240 aaKnown RBP16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 CDC16Q13042 620 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 PCOLCEQ15113 449 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 PPP1R7Q15435 360 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 INAQ16352 499 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 MSS51Q4VC12 460 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 TMEM214Q6NUQ4 689 aaKnown RBP16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 AGTRAPQ6RW13 159 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 PAQR3Q6TCH7 311 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 LCTLQ6UWM7 567 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 MAMDC2Q7Z304 686 aaPredicted RBP16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 CATSPER1Q8NEC5 780 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 BRIX1Q8TDN6 353 aaKnown RBP16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 C5orf34Q96MH7 638 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 NDNQ99608 321 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 SLX1AQ9BQ83 275 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 TUBB6Q9BUF5 446 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 SARGQ9BW04 601 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 YIPF2Q9BWQ6 316 aa16.31■□□□□ 0.2
VPS9D1-203ENST00000563798 CNTRLQ7Z7A1 2325 aa16.3■□□□□ 0.2
VPS9D1-203ENST00000563798 TEX15Q9BXT5 2789 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms