RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 SAR1BQ9Y6B6 198 aa13.4□□□□□ -0.26
TPM1-223ENST00000560445 SPTAN1Q13813 2472 aaKnown RBP13.4□□□□□ -0.26
TPM1-223ENST00000560445 A0A1W2PQ72 361 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 DYTNA2CJ06 578 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 IDSB3KWA1 339 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 SERPINA7P05543 415 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 IL10P22301 178 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 SLC26A3P40879 764 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 TSFMP43897 325 aaKnown RBP13.39□□□□□ -0.27
TPM1-223ENST00000560445 DHX9Q08211 1270 aaKnown RBP13.39□□□□□ -0.27
TPM1-223ENST00000560445 MFAP5Q13361 173 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 INAQ16352 499 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 IGFL2Q6UWQ7 119 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 SHISA6Q6ZSJ9 500 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 PARP9Q8IXQ6 854 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 SSC4DQ8WTU2 575 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.39□□□□□ -0.27
TPM1-223ENST00000560445 LINGO1Q96FE5 620 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 SNF8Q96H20 258 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 THOC3Q96J01 351 aaKnown RBP13.39□□□□□ -0.27
TPM1-223ENST00000560445 SLC30A3Q99726 388 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 NAPGQ99747 312 aaPredicted RBP13.39□□□□□ -0.27
TPM1-223ENST00000560445 KCNF1Q9H3M0 494 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 ANKHQ9HCJ1 492 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 ARL15Q9NXU5 204 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 LUZP4Q9P127 313 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 ZFATQ9P243 1243 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 STOX2Q9P2F5 926 aaPredicted RBP13.39□□□□□ -0.27
TPM1-223ENST00000560445 MED16Q9Y2X0 877 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 PCDHGA10Q9Y5H3 936 aa13.39□□□□□ -0.27
TPM1-223ENST00000560445 USP9YO00507 2555 aaPredicted RBP13.38□□□□□ -0.27
TPM1-223ENST00000560445 NAV2Q8IVL1 2488 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 IGKV1-8A0A0C4DH67 115 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 KRT87PA6NCN2 255 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 HAT1O14929 419 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 BMP10O95393 424 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 NSA2O95478 260 aaKnown RBP13.38□□□□□ -0.27
TPM1-223ENST00000560445 GLRBP48167 497 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 ZNF169Q14929 603 aaPredicted RBP13.38□□□□□ -0.27
TPM1-223ENST00000560445 KCTD19Q17RG1 926 aaPredicted RBP13.38□□□□□ -0.27
TPM1-223ENST00000560445 HKDC1Q2TB90 917 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 PLEKHN1Q494U1 663 aaPredicted RBP13.38□□□□□ -0.27
TPM1-223ENST00000560445 ATG9BQ674R7 924 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 DUPD1Q68J44 220 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 AGTRAPQ6RW13 159 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 LCTLQ6UWM7 567 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 CYHR1Q6ZMK1 362 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 PRSS58Q8IYP2 241 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 PPFIBP2Q8ND30 876 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 DNAJB14Q8TBM8 379 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 EEF1AKMT1Q8WVE0 214 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 ANKRD7Q92527 254 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 SNRNP40Q96DI7 357 aaKnown RBP13.38□□□□□ -0.27
TPM1-223ENST00000560445 VPS39Q96JC1 886 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 NDNQ99608 321 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 TUBB6Q9BUF5 446 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 ZNF160Q9HCG1 818 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 USP9XQ93008 2570 aaPredicted RBP13.38□□□□□ -0.27
TPM1-223ENST00000560445 SHANK1Q9Y566 2161 aa13.38□□□□□ -0.27
TPM1-223ENST00000560445 MDC1Q14676 2089 aaKnown RBP13.38□□□□□ -0.27
TPM1-223ENST00000560445 A0A0A6YYC8 382 aaPredicted RBP13.37□□□□□ -0.27
TPM1-223ENST00000560445 ANKUB1A6NFN9 424 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 URADA6NGE7 173 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 TCP11X1B4DZS4 312 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 H7BY64 318 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 I3L1I5 382 aaPredicted RBP13.37□□□□□ -0.27
TPM1-223ENST00000560445 WFS1O76024 890 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 C8orf89P0DMQ9 161 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 UQCRFS1P47985 274 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 AGTR2P50052 363 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 CCR8P51685 355 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 PER3P56645 1201 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 ARG2P78540 354 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 CDC16Q13042 620 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 HERC3Q15034 1050 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 FAM180AQ6UWF9 173 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 ASPGQ86U10 573 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 SLC26A11Q86WA9 606 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 KLHL7Q8IXQ5 586 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 LRRC56Q8IYG6 542 aaPredicted RBP13.37□□□□□ -0.27
TPM1-223ENST00000560445 NKAPQ8N5F7 415 aaKnown RBP13.37□□□□□ -0.27
TPM1-223ENST00000560445 CISD2Q8N5K1 135 aaKnown RBP13.37□□□□□ -0.27
TPM1-223ENST00000560445 SUN3Q8TAQ9 357 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 CFAP36Q96G28 342 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 CNDP1Q96KN2 507 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 CAPZA3Q96KX2 299 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 PRAP1Q96NZ9 151 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 SGPP1Q9BX95 441 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 MKL2Q9ULH7 1088 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 NOVA2Q9UNW9 492 aaKnown RBP13.37□□□□□ -0.27
TPM1-223ENST00000560445 PDE10AQ9Y233 779 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 VWA7Q9Y334 891 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 MRPS2Q9Y399 296 aaKnown RBP13.37□□□□□ -0.27
TPM1-223ENST00000560445 CNTRLQ7Z7A1 2325 aa13.37□□□□□ -0.27
TPM1-223ENST00000560445 LOC102723996A0A087X1L8 192 aa13.36□□□□□ -0.27
TPM1-223ENST00000560445 TRAV17A0A0B4J275 112 aa13.36□□□□□ -0.27
TPM1-223ENST00000560445 SEC31AO94979 1220 aaKnown RBP13.36□□□□□ -0.27
TPM1-223ENST00000560445 AHSGP02765 367 aa13.36□□□□□ -0.27
TPM1-223ENST00000560445 COX6A1P12074 109 aa13.36□□□□□ -0.27
TPM1-223ENST00000560445 ELK3P41970 407 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms