RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 APOA1P02647 267 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 ABCB1P08183 1280 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-232ENST00000557487 EPORP19235 508 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 CORO1AP31146 461 aaKnown RBP15.78■□□□□ 0.12
SHMT2-232ENST00000557487 SPAM1P38567 509 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 NSG1P42857 185 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 ELOAQ14241 798 aaKnown RBP15.78■□□□□ 0.12
SHMT2-232ENST00000557487 LAPTM4AQ15012 233 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 TRIM71Q2Q1W2 868 aaKnown RBP15.78■□□□□ 0.12
SHMT2-232ENST00000557487 TIMM50Q3ZCQ8 353 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 COLEC12Q5KU26 742 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 OR4F3Q6IEY1 312 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 NOXRED1Q6NXP6 359 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 NXPE1Q8N323 547 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 SYNPOQ8N3V7 929 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 DENND6BQ8NEG7 585 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 OR10Q1Q8NGQ4 319 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 HOXD1Q9GZZ0 328 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 IL26Q9NPH9 171 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 POLE4Q9NR33 117 aa15.78■□□□□ 0.12
SHMT2-232ENST00000557487 SCAMP3O14828 347 aaKnown RBP15.77■□□□□ 0.12
SHMT2-232ENST00000557487 SLC16A5O15375 505 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 TBX1O43435 398 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 UGDHO60701 494 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 SOCS5O75159 536 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 STC2O76061 302 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 VNN2O95498 520 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 LATS1O95835 1130 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 ANXA8P13928 327 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 CSNK1DP48730 415 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 SP140Q13342 867 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 TEAD4Q15561 434 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 IQCCQ4KMZ1 466 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 RNF19BQ6ZMZ0 732 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 MTFMTQ96DP5 389 aaKnown RBP15.77■□□□□ 0.12
SHMT2-232ENST00000557487 C7orf34Q96L11 122 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 CCDC32Q9BV29 185 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 SLC12A9Q9BXP2 914 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 REXO4Q9GZR2 422 aaKnown RBP15.77■□□□□ 0.12
SHMT2-232ENST00000557487 CRISPLD1Q9H336 500 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 ZBTB20Q9HC78 741 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-232ENST00000557487 ENOPH1Q9UHY7 261 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 PNMA8BQ9ULN7 279 aaPredicted RBP15.77■□□□□ 0.12
SHMT2-232ENST00000557487 PCDHB11Q9Y5F2 797 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 PCDHGA3Q9Y5H0 932 aa15.77■□□□□ 0.12
SHMT2-232ENST00000557487 FRMPD3Q5JV73 1810 aa15.77■□□□□ 0.11
SHMT2-232ENST00000557487 AGAP14A8MT82 685 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 SUV39H1O43463 412 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 TRBC1P01850 177 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 HIST1H2AGP0C0S8 130 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-232ENST00000557487 HIST1H2ADP20671 130 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 GADD45AP24522 165 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 TACR1P25103 407 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 SOX6P35712 828 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 SLC6A12P48065 614 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 MNX1P50219 401 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-232ENST00000557487 DUSP4Q13115 394 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 SLC13A2Q13183 592 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 SLC14A1Q13336 389 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 HKDC1Q2TB90 917 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 LRIT3Q3SXY7 679 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 FRG2Q64ET8 278 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 VTCN1Q7Z7D3 282 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 SYT12Q8IV01 421 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 CLDN19Q8N6F1 224 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 GALNT6Q8NCL4 622 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 HTRA1Q92743 480 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 HIST1H2AHQ96KK5 128 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 FRG2BQ96QU4 278 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 HIST1H2AJQ99878 128 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 RHNO1Q9BSD3 238 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 H2AFJQ9BTM1 129 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 C6orf62Q9GZU0 229 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-232ENST00000557487 ZNF106Q9H2Y7 1883 aaKnown RBP15.76■□□□□ 0.11
SHMT2-232ENST00000557487 AASSQ9UDR5 926 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 SLCO3A1Q9UIG8 710 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 STOML2Q9UJZ1 356 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 POFUT2Q9Y2G5 429 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 ZNF840PA6NDX5 716 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 FAM47E-STBD1D6RA91 191 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 SCN2BO60939 215 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 PRAMEF12O95522 483 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 KLKB1P03952 638 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 MPC1LP0DKB6 136 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 EPHA2P29317 976 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 PCGF2P35227 344 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 LIMK1P53667 647 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 PTPRRQ15256 657 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 SYT16Q17RD7 645 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 ZNF621Q6ZSS3 439 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 ANKS3Q6ZW76 656 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 ZNF367Q7RTV3 350 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 PARP16Q8N5Y8 322 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 VPS37AQ8NEZ2 397 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 ZNF675Q8TD23 568 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 APIPQ96GX9 242 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 B3GALT6Q96L58 329 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 APOLD1Q96LR9 279 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 DOHHQ9BU89 302 aa15.76■□□□□ 0.11
SHMT2-232ENST00000557487 CDADC1Q9BWV3 514 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms