RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 TGIF2Q9GZN2 237 aa12.67□□□□□ -0.38
CPSF6-204ENST00000547486 DDX47Q9H0S4 455 aaKnown RBP12.67□□□□□ -0.38
CPSF6-204ENST00000547486 TRMT1Q9NXH9 659 aaKnown RBP12.67□□□□□ -0.38
CPSF6-204ENST00000547486 UTP6Q9NYH9 597 aaKnown RBP12.67□□□□□ -0.38
CPSF6-204ENST00000547486 SLC17A6Q9P2U8 582 aa12.67□□□□□ -0.38
CPSF6-204ENST00000547486 PDE10AQ9Y233 779 aa12.67□□□□□ -0.38
CPSF6-204ENST00000547486 ESPL1Q14674 2120 aa12.67□□□□□ -0.38
CPSF6-204ENST00000547486 RP1L1Q8IWN7 2480 aaPredicted RBP12.66□□□□□ -0.38
CPSF6-204ENST00000547486 KCNE1BA0A087WTH5 132 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 IGHV1-45A0A0A0MS14 117 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 NSG1A0A0A6YYJ2 146 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 A0A1W2PQ72 361 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 DNALI1O14645 258 aaPredicted RBP12.66□□□□□ -0.38
CPSF6-204ENST00000547486 JRKO75564 520 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 PRR35P0CG20 571 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 EEF1A2Q05639 463 aaKnown RBP12.66□□□□□ -0.38
CPSF6-204ENST00000547486 MFAP5Q13361 173 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 PTK6Q13882 451 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 ZNF169Q14929 603 aaPredicted RBP12.66□□□□□ -0.38
CPSF6-204ENST00000547486 PPP1R7Q15435 360 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 IRAK1BP1Q5VVH5 260 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 PRSS41Q7RTY9 318 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 ZC3H7AQ8IWR0 971 aaKnown RBP12.66□□□□□ -0.38
CPSF6-204ENST00000547486 OR9A4Q8NGU2 314 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 BRIX1Q8TDN6 353 aaKnown RBP12.66□□□□□ -0.38
CPSF6-204ENST00000547486 GRHL3Q8TE85 626 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 VPS50Q96JG6 964 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 CNDP1Q96KN2 507 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 CCDC138Q96M89 665 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 DRC3Q9H069 523 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 ATG10Q9H0Y0 220 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 KCNF1Q9H3M0 494 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 MKKSQ9NPJ1 570 aaPredicted RBP12.66□□□□□ -0.38
CPSF6-204ENST00000547486 TMEM184CQ9NVA4 438 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 PLA2G3Q9NZ20 509 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 PTGFRNQ9P2B2 879 aa12.66□□□□□ -0.38
CPSF6-204ENST00000547486 TRMT6Q9UJA5 497 aaKnown RBP12.66□□□□□ -0.38
CPSF6-204ENST00000547486 LOC102723996A0A087X1L8 192 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 GOLGA6L10A0A0M3HER8 536 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 FEZF1A0PJY2 475 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 OR2W5A6NFC9 320 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 EIF3FO00303 357 aaPredicted RBP12.65□□□□□ -0.38
CPSF6-204ENST00000547486 CES2O00748 559 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 TXNDC9O14530 226 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 PRPF4O43172 522 aaKnown RBP eCLIP12.65□□□□□ -0.38
CPSF6-204ENST00000547486 LCMT2O60294 686 aaKnown RBP12.65□□□□□ -0.38
CPSF6-204ENST00000547486 BMP10O95393 424 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 TSPAN12O95859 305 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 DDAH2O95865 285 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 LDLRP01130 860 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 HEXBP07686 556 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 ANXA5P08758 320 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 SOX11P35716 441 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 TSFMP43897 325 aaKnown RBP12.65□□□□□ -0.38
CPSF6-204ENST00000547486 TBPL1P62380 186 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 CSNK1G2P78368 415 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 CDC16Q13042 620 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 FAM53BQ14153 422 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 PCOLCEQ15113 449 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 TLR1Q15399 786 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 PHKG1Q16816 387 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 HP1BP3Q5SSJ5 553 aaPredicted RBP12.65□□□□□ -0.38
CPSF6-204ENST00000547486 AGTRAPQ6RW13 159 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 TMEM205Q6UW68 189 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 CNTN4Q8IWV2 1026 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 MCOLN3Q8TDD5 553 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 EPS8L2Q9H6S3 715 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 PARVBQ9HBI1 364 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 CCDC177Q9NQR7 707 aaPredicted RBP12.65□□□□□ -0.38
CPSF6-204ENST00000547486 C14orf105Q9NVL8 296 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 ASIC3Q9UHC3 531 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 MKL2Q9ULH7 1088 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 ICE1Q9Y2F5 2266 aa12.65□□□□□ -0.38
CPSF6-204ENST00000547486 E2F3O00716 465 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 CLDN1O95832 211 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 SERPINA7P05543 415 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 C8GP07360 202 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 NPPBP16860 134 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 HRH2P25021 359 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 CXCR2P25025 360 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 COL8A1P27658 744 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 BCL6P41182 706 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 NAE1Q13564 534 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 BBS9Q3SYG4 887 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 SPANXN3Q5MJ09 141 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 TEDDM1Q5T9Z0 273 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 B3GNTL1Q67FW5 361 aaPredicted RBP12.64□□□□□ -0.39
CPSF6-204ENST00000547486 UGT3A1Q6NUS8 523 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 SIRT6Q8N6T7 355 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 KCT2Q8NC54 265 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 ST6GALNAC3Q8NDV1 305 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 OR1N1Q8NGS0 311 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 FAR1Q8WVX9 515 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 SLCO2A1Q92959 643 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 ALKBH8Q96BT7 664 aaKnown RBP12.64□□□□□ -0.39
CPSF6-204ENST00000547486 TM4SF19Q96DZ7 209 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 LINGO1Q96FE5 620 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 IMMP1LQ96LU5 166 aa12.64□□□□□ -0.39
CPSF6-204ENST00000547486 WDR83Q9BRX9 315 aaKnown RBP12.64□□□□□ -0.39
CPSF6-204ENST00000547486 SGPP1Q9BX95 441 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms