RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 LMX1AQ8TE12 382 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 GIMAP1Q8WWP7 306 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 IFT81Q8WYA0 676 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 OR1E3Q8WZA6 343 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 LRRC39Q96DD0 335 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 SNX22Q96L94 193 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 PWWP2AQ96N64 755 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 OR2M4Q96R27 311 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 COPS8Q99627 209 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 EBNA1BP2Q99848 306 aaKnown RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 RHOXF2Q9BQY4 288 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 NAT9Q9BTE0 207 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 FGF22Q9HCT0 170 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 TREX1Q9NSU2 369 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 GRHL1Q9NZI5 618 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 AKAP7Q9P0M2 348 aaPredicted RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 ATXN10Q9UBB4 475 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 TCFL5Q9UL49 500 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 SUFUQ9UMX1 484 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 OAS3Q9Y6K5 1087 aaKnown RBP4.98□□□□□ -1.61
CLIP1-217ENST00000543205 CFAP47Q6ZTR5 3102 aa4.98□□□□□ -1.61
CLIP1-217ENST00000543205 A0A0B4J203 849 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 PTGES3LE9PB15 166 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 PFDN6O15212 129 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 KMOO15229 486 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 TP73O15350 636 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 EIF3HO15372 352 aaKnown RBP eCLIP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 CD3EAPO15446 510 aaKnown RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 AQP9O43315 295 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 GRID2O43424 1007 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 NUAK1O60285 661 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 KLHL41O60662 606 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 BANF1O75531 89 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 PIAS2O75928 621 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 WNT11O96014 354 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 ANXA6P08133 673 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 ALPPL2P10696 532 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 COL6A2P12110 1019 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 TFEBP19484 476 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 BTF3P20290 206 aaKnown RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 SDHBP21912 280 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 DGKAP23743 735 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 PBLDP30039 288 aaPredicted RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 FOXN2P32314 431 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 TUBB4BP68371 445 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 POU4F1Q01851 419 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 ACTN3Q08043 901 aaPredicted RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 ILF3Q12906 894 aaKnown RBP eCLIP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 C1orf61Q13536 156 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 THOC5Q13769 683 aaKnown RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 SHBQ15464 509 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 TRADDQ15628 312 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 ST3GAL2Q16842 350 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 PYCR3Q53H96 274 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 SPANXN3Q5MJ09 141 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 TEX35Q5T0J7 233 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 KIAA0930Q6ICG6 404 aaPredicted RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 MRNIPQ6NTE8 343 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 TMEM220Q6QAJ8 160 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 FIP1L1Q6UN15 594 aaKnown RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 CERS6Q6ZMG9 384 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 RNF111Q6ZNA4 994 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 CEP128Q6ZU80 1094 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 DET1Q7L5Y6 550 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 TAF8Q7Z7C8 310 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 TMEM135Q86UB9 458 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 SERPINA9Q86WD7 417 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 CCDC25Q86WR0 208 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 GKN2Q86XP6 184 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 GATAD2AQ86YP4 633 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 WFDC3Q8IUB2 231 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 TRAPPC5Q8IUR0 188 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 PALM2Q8IXS6 379 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 IFT20Q8IY31 132 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 ZBED8Q8IZ13 594 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 FBXO36Q8NEA4 188 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 ZNF548Q8NEK5 533 aaPredicted RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 GABPB2Q8TAK5 448 aaPredicted RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 FBXO25Q8TCJ0 367 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 SAP25Q8TEE9 199 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 SETD7Q8WTS6 366 aaKnown RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 PYROXD1Q8WU10 500 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 SEC14L1Q92503 715 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 VPS33AQ96AX1 596 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 CFAP36Q96G28 342 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 PDXPQ96GD0 296 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 DMRTA2Q96SC8 542 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 GSDMCQ9BYG8 508 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 KRTAP4-11Q9BYQ6 195 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 FAM129AQ9BZQ8 928 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 TCEAL2Q9H3H9 227 aaPredicted RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 SEPSECSQ9HD40 501 aaKnown RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 PDE7BQ9NP56 450 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 PPANQ9NQ55 473 aaKnown RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 PRDM8Q9NQV8 689 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 C20orf96Q9NUD7 363 aaPredicted RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 TBCCD1Q9NVR7 557 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 UCKL1Q9NWZ5 548 aa4.97□□□□□ -1.61
CLIP1-217ENST00000543205 MTRF1LQ9UGC7 380 aaKnown RBP4.97□□□□□ -1.61
CLIP1-217ENST00000543205 HSF4Q9ULV5 492 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms