RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CCNB1IP1Q9NPC3 277 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 C3orf18Q9UK00 162 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 HCN2Q9UL51 889 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CLEC4AQ9UMR7 237 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 FIS1Q9Y3D6 152 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 TEX46H3BTG2 121 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 APOC4-APOC2K7ER74 178 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 SLC31A2O15432 143 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 HOXA2O43364 376 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 KIAA0513O60268 411 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 FAM20BO75063 409 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CREG1O75629 220 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 BEST1O76090 585 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 APOC2P02655 101 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 MYL3P08590 195 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PRG2P13727 222 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 HOXB8P17481 243 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 HRH2P25021 359 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ACTR1AP61163 376 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 TP53BP2Q13625 1128 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PON3Q15166 354 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 FCN2Q15485 313 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 WSCD2Q2TBF2 565 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 RABL3Q5HYI8 236 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 OR2B11Q5JQS5 317 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 TEX30Q5JUR7 227 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 SSX9Q7RTT3 188 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ZNF720Q7Z2F6 126 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 DENND1CQ8IV53 801 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CHURC1Q8WUH1 139 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 BSNDQ8WZ55 320 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 FCRL3Q96P31 734 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 MCEEQ96PE7 176 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 RBM4BQ9BQ04 359 aaKnown RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 RBM4Q9BWF3 364 aaKnown RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 MRPL4Q9BYD3 311 aaKnown RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CD244Q9BZW8 370 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 MUC13Q9H3R2 512 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 MVB12BQ9H7P6 319 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CRLF2Q9HC73 371 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PAK5Q9P286 719 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 MORF4L1Q9UBU8 362 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 FEM1BQ9UK73 627 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PCDHGC4Q9Y5F7 938 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PCDHGB7Q9Y5F8 929 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PCDHGA6Q9Y5G7 932 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PCDHGA5Q9Y5G8 931 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PCDHGA1Q9Y5H4 931 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PCDHA9Q9Y5H5 950 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 LOC285556D6RIA3 1793 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 A0A096LPK6 155 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 TMEM88BA6NKF7 163 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 HCN1O60741 890 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 LPLP06858 475 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 SPP1P10451 314 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 HAPLN1P10915 354 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 TSPAN8P19075 237 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PBLDP30039 288 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PRMT2P55345 433 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CLDN20P56880 219 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CXCR4P61073 352 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CAP1Q01518 475 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 DEFA6Q01524 100 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 MLLT1Q03111 559 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 YWHAHQ04917 246 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 SPIRE1Q08AE8 756 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 GLYR1Q49A26 553 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 NHLRC3Q5JS37 347 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ARHGAP17Q68EM7 881 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 C3orf33Q6P1S2 294 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 SPESP1Q6UW49 350 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 NPNTQ6UXI9 565 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CATSPERGQ6ZRH7 1159 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CYS1Q717R9 158 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ZNF527Q8NB42 609 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 OR2T4Q8NH00 348 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PHOSPHO1Q8TCT1 267 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ELP5Q8TE02 316 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 NR4A3Q92570 626 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 LRRC46Q96FV0 321 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 NARS2Q96I59 477 aaKnown RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PFDN5Q99471 154 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 TMEM175Q9BSA9 504 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ATP13A1Q9HD20 1204 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 CHMP1AQ9HD42 196 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 NLKQ9UBE8 527 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 ABT1Q9ULW3 272 aaKnown RBP9.18□□□□□ -0.94
CLIP1-214ENST00000540539 GABRQQ9UN88 632 aa9.18□□□□□ -0.94
CLIP1-214ENST00000540539 PARP14Q460N5 1801 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 BBIP1A8MTZ0 92 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 C9JVG2 144 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 ANKRD28O15084 1053 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 LALBAP00709 142 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 F7P08709 466 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-214ENST00000540539 SBK3P0C264 359 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 FAM157BP0CG42 384 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 CYP4B1P13584 511 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 CD72P21854 359 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 RFC3P40938 356 aa9.17□□□□□ -0.94
CLIP1-214ENST00000540539 MAGEA6P43360 314 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms