RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 OR2AG1Q9H205 316 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 SMURF1Q9HCE7 757 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 ZNF69Q9UC07 566 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 PCDHA2Q9Y5H9 948 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 HSPA12AO43301 675 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 GNAO1P09471 354 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 FAM110CQ1W6H9 321 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 VMACQ2NL98 169 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 CLEC12AQ5QGZ9 265 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 OR2T5Q6IEZ7 315 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 ABHD13Q7L211 337 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 ARL14EPQ8N8R7 260 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-209ENST00000537178 OR2T29Q8NH02 315 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 ASB9Q96DX5 294 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 PDZD7Q9H5P4 517 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 CRTAC1Q9NQ79 661 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 COL16A1Q07092 1604 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-209ENST00000537178 NAV1Q8NEY1 1877 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 ZNF670-ZNF695F2Z2N8 137 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 I3L521 148 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 SLBPQ14493 270 aaKnown RBP eCLIP10.37□□□□□ -0.75
CLIP1-209ENST00000537178 PDCD4Q53EL6 469 aaKnown RBP10.37□□□□□ -0.75
CLIP1-209ENST00000537178 SPIN4Q56A73 249 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 TPRG1LQ5T0D9 272 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 SLC51AQ86UW1 340 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 CAMKVQ8NCB2 501 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 STOML3Q8TAV4 291 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 PNPLA2Q96AD5 504 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 FCRL5Q96RD9 977 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 CGREF1Q99674 301 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 NIFKQ9BYG3 293 aaKnown RBP10.37□□□□□ -0.75
CLIP1-209ENST00000537178 TMEM184CQ9NVA4 438 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 NENFQ9UMX5 172 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 NOP16Q9Y3C1 178 aaKnown RBP10.37□□□□□ -0.75
CLIP1-209ENST00000537178 LILRA4P59901 499 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 S100A10P60903 97 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 NFKB2Q00653 900 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 TMEM164Q5U3C3 297 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 SYCE2Q6PIF2 218 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 NPAS4Q8IUM7 802 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 YIPF7Q8N8F6 280 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 AVL9Q8NBF6 648 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 FUBP3Q96I24 572 aaKnown RBP eCLIP10.37□□□□□ -0.75
CLIP1-209ENST00000537178 SLC35A5Q9BS91 424 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 ITPAQ9BY32 194 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 ENY2Q9NPA8 101 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 ZIM2Q9NZV7 527 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 CNTN3Q9P232 1028 aa10.37□□□□□ -0.75
CLIP1-209ENST00000537178 ZNFX1Q9P2E3 1918 aaKnown RBP10.36□□□□□ -0.75
CLIP1-209ENST00000537178 BCL9O00512 1426 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 WNT9AO14904 365 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 COQ9O75208 318 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 SCGB1D2O95969 90 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 ITGA5P08648 1049 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 MAPK3P27361 379 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-209ENST00000537178 RIPPLY1Q0D2K3 151 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 AIMP2Q13155 320 aaKnown RBP10.36□□□□□ -0.75
CLIP1-209ENST00000537178 PDSS1Q5T2R2 415 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 PYROXD2Q8N2H3 581 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 HDDC3Q8N4P3 179 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 TM9SF2Q99805 663 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 TUBA1CQ9BQE3 449 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 LPIN3Q9BQK8 851 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 MND1Q9BWT6 205 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 GLS2Q9UI32 602 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 FZD4Q9ULV1 537 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 CLEC3AO75596 197 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 AGXTP21549 392 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 MAT2AP31153 395 aaKnown RBP10.36□□□□□ -0.75
CLIP1-209ENST00000537178 ST3GAL3Q11203 375 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 GPR68Q15743 365 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 FOXRED2Q8IWF2 684 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 LRRC57Q8N9N7 239 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 TMEM68Q96MH6 324 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 USP29Q9HBJ7 922 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 SCP2D1Q9UJQ7 156 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 PLEKHA6Q9Y2H5 1048 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 KCNIP3Q9Y2W7 256 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 TRBC2A0A5B9 178 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 TSPAN1O60635 241 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 CD48P09326 243 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 IFI30P13284 250 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 GNSP15586 552 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 CKMT2P17540 419 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 KLF1Q13351 362 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-209ENST00000537178 ZNF460Q14592 562 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 SEC23BQ15437 767 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 VARS2Q5ST30 1063 aaKnown RBP10.36□□□□□ -0.75
CLIP1-209ENST00000537178 ZNF517Q6ZMY9 492 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-209ENST00000537178 P4HA3Q7Z4N8 544 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 ZNF227Q86WZ6 799 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 LSM14AQ8ND56 463 aaKnown RBP10.36□□□□□ -0.75
CLIP1-209ENST00000537178 CMTM7Q96FZ5 175 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 ZNF599Q96NL3 588 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 SEC61A2Q9H9S3 476 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 RDH8Q9NYR8 311 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 KLF15Q9UIH9 416 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 FZD10Q9ULW2 581 aa10.36□□□□□ -0.75
CLIP1-209ENST00000537178 ZNF646O15015 1829 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-209ENST00000537178 HAS3O00219 553 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms