RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 C19orf25Q9UFG5 118 aaPredicted RBP4□□□□□ -1.77
CD44-223ENST00000526553 LIPT1Q9Y234 373 aa4□□□□□ -1.77
CD44-223ENST00000526553 WDR83OSQ9Y284 106 aa4□□□□□ -1.77
CD44-223ENST00000526553 SNX5Q9Y5X3 404 aa4□□□□□ -1.77
CD44-223ENST00000526553 KRT33AO76009 404 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 SORBS2O94875 1100 aaKnown RBP3.99□□□□□ -1.77
CD44-223ENST00000526553 DUS4LO95620 317 aaKnown RBP3.99□□□□□ -1.77
CD44-223ENST00000526553 SAGP10523 405 aaPredicted RBP3.99□□□□□ -1.77
CD44-223ENST00000526553 SLC2A2P11168 524 aaPredicted RBP3.99□□□□□ -1.77
CD44-223ENST00000526553 CD22P20273 847 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 CYP2A7P20853 494 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 MMP12P39900 470 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 GSCP56915 257 aaPredicted RBP3.99□□□□□ -1.77
CD44-223ENST00000526553 IYDQ6PHW0 289 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 PPP1R21Q6ZMI0 780 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 Q6ZRP5 223 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 LGI2Q8N0V4 545 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 SIX6OS1Q8N1H7 587 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 OR10Q1Q8NGQ4 319 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 GRK7Q8WTQ7 553 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 KCNE4Q8WWG9 221 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 EXT2Q93063 718 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 MR1Q95460 341 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 FAM71F1Q96KD3 344 aaPredicted RBP3.99□□□□□ -1.77
CD44-223ENST00000526553 C18orf12Q96KH6 178 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 C4orf45Q96LM5 186 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 CCDC43Q96MW1 224 aaKnown RBP3.99□□□□□ -1.77
CD44-223ENST00000526553 ZNF558Q96NG5 402 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 MUS81Q96NY9 551 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 IWS1Q96ST2 819 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 FEVQ99581 238 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 CPNE1Q99829 537 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 FAM129AQ9BZQ8 928 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 CDH20Q9HBT6 801 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 DNAJB9Q9UBS3 223 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 RNF150Q9ULK6 438 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 SNX7Q9UNH6 387 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 ANGPTL3Q9Y5C1 460 aa3.99□□□□□ -1.77
CD44-223ENST00000526553 RPGRIP1LQ68CZ1 1315 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 A0A0U1RQG5 324 aaPredicted RBP3.98□□□□□ -1.77
CD44-223ENST00000526553 A0A0U1RQK1 487 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 ZNF320A2RRD8 509 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 TRIM64A6NGJ6 449 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 TRIM64BA6NI03 449 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 ERI2A8K979 691 aaKnown RBP3.98□□□□□ -1.77
CD44-223ENST00000526553 KPNA7A9QM74 516 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 H0YAE9 185 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 CLDN4O14493 209 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 CRLF1O75462 422 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 CSN3P07498 182 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 OR52Z1P0C646 297 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 EPCAMP16422 314 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 OPRL1P41146 370 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 VAMP7P51809 220 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 CYCSP99999 105 aaKnown RBP3.98□□□□□ -1.77
CD44-223ENST00000526553 YWHAHQ04917 246 aaPredicted RBP3.98□□□□□ -1.77
CD44-223ENST00000526553 ACSM1Q08AH1 577 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 VEZF1Q14119 521 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 SLMAPQ14BN4 828 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 SLC1A5Q15758 541 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 NPTX1Q15818 432 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 MEP1BQ16820 701 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 FASTKD1Q53R41 847 aaKnown RBP3.98□□□□□ -1.77
CD44-223ENST00000526553 LYSMD4Q5XG99 296 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 LINC00696Q6ZRV3 163 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 ZBTB49Q6ZSB9 765 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 RAPH1Q70E73 1250 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 PIWIL3Q7Z3Z3 882 aaKnown RBP3.98□□□□□ -1.77
CD44-223ENST00000526553 SPATA21Q7Z572 469 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 ABI3BPQ7Z7G0 1075 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 LRRTM1Q86UE6 522 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 CHCHD4Q8N4Q1 142 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 C10orf53Q8N6V4 93 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 ATAD1Q8NBU5 361 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 MAPK15Q8TD08 544 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 APOBEC4Q8WW27 367 aaKnown RBP3.98□□□□□ -1.77
CD44-223ENST00000526553 CORO2AQ92828 525 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 SLCO2A1Q92959 643 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 SPSB1Q96BD6 273 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 NKX3-1Q99801 234 aaPredicted RBP3.98□□□□□ -1.77
CD44-223ENST00000526553 DGCR6LQ9BY27 220 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 UBXN6Q9BZV1 441 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 ZMYND12Q9H0C1 365 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 CDH7Q9ULB5 785 aa3.98□□□□□ -1.77
CD44-223ENST00000526553 MYH14Q7Z406 1995 aaKnown RBP3.97□□□□□ -1.77
CD44-223ENST00000526553 A0A1W2PPK0 400 aa3.97□□□□□ -1.77
CD44-223ENST00000526553 MEX3AA1L020 520 aaKnown RBP3.97□□□□□ -1.77
CD44-223ENST00000526553 OOEPA6NGQ2 149 aa3.97□□□□□ -1.77
CD44-223ENST00000526553 FMO6PO60774 539 aa3.97□□□□□ -1.77
CD44-223ENST00000526553 GBAP04062 536 aa3.97□□□□□ -1.77
CD44-223ENST00000526553 ZFYP08048 801 aaPredicted RBP3.97□□□□□ -1.77
CD44-223ENST00000526553 PDGFRAP16234 1089 aa3.97□□□□□ -1.77
CD44-223ENST00000526553 ADRA2CP18825 462 aa3.97□□□□□ -1.77
CD44-223ENST00000526553 UGT1A4P22310 534 aa3.97□□□□□ -1.77
CD44-223ENST00000526553 CLDN15P56746 228 aa3.97□□□□□ -1.77
CD44-223ENST00000526553 POLR2LP62875 67 aaKnown RBP3.97□□□□□ -1.77
CD44-223ENST00000526553 EFTUD2Q15029 972 aaKnown RBP eCLIP3.97□□□□□ -1.77
CD44-223ENST00000526553 ZNF74Q16587 644 aa3.97□□□□□ -1.77
CD44-223ENST00000526553 ZRANB3Q5FWF4 1079 aa3.97□□□□□ -1.77
CD44-223ENST00000526553 NHSL2Q5HYW2 709 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms