RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 A0A1W2PPV9 198 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 CCDC189A1A4V9 331 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 E7ENX8 843 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 PRICKLE3O43900 615 aaPredicted RBP9.71□□□□□ -0.86
VPS28-204ENST00000526054 SORBS2O94875 1100 aaKnown RBP9.71□□□□□ -0.86
VPS28-204ENST00000526054 GUCA1CO95843 209 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 ALDOAP04075 364 aaKnown RBP9.71□□□□□ -0.86
VPS28-204ENST00000526054 S100BP04271 92 aaPredicted RBP9.71□□□□□ -0.86
VPS28-204ENST00000526054 ANXA5P08758 320 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 RAB40ALP0C0E4 278 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 MSL3P1P0C860 447 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 PVRP15151 417 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 MAGP20916 626 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 PSMB5P28074 263 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 RORAP35398 523 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 MAGEA12P43365 314 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 TBPL1P62380 186 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 ABATP80404 500 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 TAP2Q03519 686 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 PPP1R3AQ16821 1122 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 FAM83EQ2M2I3 478 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 FHL5Q5TD97 284 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 FAM69BQ5VUD6 431 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 PRAMEF13Q5VWM6 474 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 LCN10Q6JVE6 187 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 CAPN13Q6MZZ7 669 aaPredicted RBP9.71□□□□□ -0.86
VPS28-204ENST00000526054 AGTRAPQ6RW13 159 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 SUSD1Q6UWL2 747 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 MBOAT1Q6ZNC8 495 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 GPSM1Q86YR5 675 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 TCAIMQ8N3R3 496 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 SPATA6LQ8N4H0 392 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 LMNTD1Q8N9Z9 388 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 PPFIBP2Q8ND30 876 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 OR2L3Q8NG85 312 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 OR1L3Q8NH93 324 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 STAG3L4Q8TBR4 150 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 N4BP2L2Q92802 583 aaPredicted RBP9.71□□□□□ -0.86
VPS28-204ENST00000526054 KIAA1191Q96A73 305 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 TCTN2Q96GX1 697 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 CABS1Q96KC9 395 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 MIPEPQ99797 713 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 EGFL8Q99944 293 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 NLNQ9BYT8 704 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 UNKQ9C0B0 810 aaKnown RBP9.71□□□□□ -0.86
VPS28-204ENST00000526054 CHRNA10Q9GZZ6 450 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 KLHL25Q9H0H3 589 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 MLXIPLQ9NP71 852 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 MRPS30Q9NP92 439 aaKnown RBP9.71□□□□□ -0.86
VPS28-204ENST00000526054 ABCF3Q9NUQ8 709 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 PCMTD2Q9NV79 361 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 TAC3Q9UHF0 121 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 IKZF3Q9UKT9 509 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 TCFL5Q9UL49 500 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 RNF112Q9ULX5 631 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 PADI2Q9Y2J8 665 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 ZNF451Q9Y4E5 1061 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 USP9YO00507 2555 aaPredicted RBP9.71□□□□□ -0.86
VPS28-204ENST00000526054 SPTBP11277 2137 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 SHANK1Q9Y566 2161 aa9.71□□□□□ -0.86
VPS28-204ENST00000526054 TARM1B6A8C7 271 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 C9J4A7 227 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 E7EQ34 232 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 DPM1O60762 260 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 KERAO60938 352 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 CEACAM4O75871 244 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 KLHL2O95198 593 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 SHBGP04278 402 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 NUDT17P0C025 328 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 COL6A2P12110 1019 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 H2AFXP16104 143 aaPredicted RBP9.7□□□□□ -0.86
VPS28-204ENST00000526054 TFEBP19484 476 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 GCAP28676 217 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 HNMTP50135 292 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 RRADP55042 308 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 ITGA1P56199 1179 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 IRF9Q00978 393 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 IFFO1Q0D2I5 559 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 DLG1Q12959 904 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 NAE1Q13564 534 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 NCF4Q15080 339 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 TSNAXIP1Q2TAA8 658 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 PTCHD3Q3KNS1 767 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 CDKL4Q5MAI5 379 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 ICE2Q659A1 982 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 FIGLAQ6QHK4 219 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 TDRPQ86YL5 185 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 RAB43Q86YS6 212 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 LRRC56Q8IYG6 542 aaPredicted RBP9.7□□□□□ -0.86
VPS28-204ENST00000526054 CENPLQ8N0S6 344 aaPredicted RBP9.7□□□□□ -0.86
VPS28-204ENST00000526054 MREGQ8N565 214 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 TMEM102Q8N9M5 508 aaPredicted RBP9.7□□□□□ -0.86
VPS28-204ENST00000526054 FDCSPQ8NFU4 85 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 OR2A1Q8NGT9 310 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 OR56A3Q8NH54 315 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 KCTD4Q8WVF5 259 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 ZUFSPQ96AP4 578 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 ALKBH8Q96BT7 664 aaKnown RBP9.7□□□□□ -0.86
VPS28-204ENST00000526054 PTERQ96BW5 349 aa9.7□□□□□ -0.86
VPS28-204ENST00000526054 NXNL1Q96CM4 212 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms