RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 MAP3K5Q99683 1374 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 KIF16BQ96L93 1317 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 LOC100653049A0A140TA62 436 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 A6NL46 340 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 M0QZ24 198 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 NDUFS8O00217 210 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 E2F3O00716 465 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 ZIC3O60481 467 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 PRDM1O75626 825 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 KRT34O76011 436 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 SYF2O95926 243 aaKnown RBP4.57□□□□□ -1.68
CD44-220ENST00000525688 KRT6BP04259 564 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 S100A6P06703 90 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 ABHD2P08910 425 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 G6PDP11413 515 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 PTPN4P29074 926 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 SFNP31947 248 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 CTNNB1P35222 781 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 WNT5AP41221 380 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 KRT6CP48668 564 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 NUDT6P53370 316 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 AP3M2P53677 418 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 UBE2HP62256 183 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 GFPT1Q06210 699 aaPredicted RBP4.57□□□□□ -1.68
CD44-220ENST00000525688 CCDC173Q0VFZ6 552 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 PRTGQ2VWP7 1150 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 FSCBQ5H9T9 825 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 LCE1DQ5T752 114 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 SFMBT2Q5VUG0 894 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 FRG2Q64ET8 278 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 Q6ZTK2 550 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 SYVN1Q86TM6 617 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 IQCHQ86VS3 1027 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 AMZ2Q86W34 360 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 FOXRED2Q8IWF2 684 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 GUF1Q8N442 669 aaKnown RBP4.57□□□□□ -1.68
CD44-220ENST00000525688 EIF1ADQ8N9N8 165 aaKnown RBP4.57□□□□□ -1.68
CD44-220ENST00000525688 DBF4BQ8NFT6 615 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 OR52E1Q8NGJ3 308 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 OR2T34Q8NGX1 318 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 LILRB4Q8NHJ6 448 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 LRRC8CQ8TDW0 803 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 ARHGAP45Q92619 1136 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 PLEKHF1Q96S99 279 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 RIOK1Q9BRS2 568 aaKnown RBP4.57□□□□□ -1.68
CD44-220ENST00000525688 GPR88Q9GZN0 384 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 SPRTNQ9H040 489 aaPredicted RBP4.57□□□□□ -1.68
CD44-220ENST00000525688 THAP2Q9H0W7 228 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 GLT8D2Q9H1C3 349 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 TUFT1Q9NNX1 390 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 PALMDQ9NP74 551 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 CNGB3Q9NQW8 809 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 FAM212BQ9NTI7 297 aaPredicted RBP4.57□□□□□ -1.68
CD44-220ENST00000525688 DNAJC17Q9NVM6 304 aaKnown RBP4.57□□□□□ -1.68
CD44-220ENST00000525688 SLC9A2Q9UBY0 812 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 BAIAP2L1Q9UHR4 511 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 CDC14AQ9UNH5 594 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 TMEM184BQ9Y519 407 aaPredicted RBP4.57□□□□□ -1.68
CD44-220ENST00000525688 U3KQV3 271 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 SCN11AQ9UI33 1791 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 UTRNP46939 3433 aa4.57□□□□□ -1.68
CD44-220ENST00000525688 CEMIPQ8WUJ3 1361 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 CASZ1Q86V15 1759 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 ZNF541Q9H0D2 1346 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 RPS10-NUDT3A0A1W2PQS6 291 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 CPED1A4D0V7 1026 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 ACOD1A6NK06 481 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 H3BQ06 376 aaPredicted RBP4.56□□□□□ -1.68
CD44-220ENST00000525688 RGS14O43566 566 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 MTX2O75431 263 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 FAM58BPP0C7Q3 252 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 THRBP10828 461 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 HOXB2P14652 356 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 NR2F2P24468 414 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 HMGB2P26583 209 aaKnown RBP4.56□□□□□ -1.68
CD44-220ENST00000525688 CD27P26842 260 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 PSMA5P28066 241 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 RFC2P35250 354 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 CCT6AP40227 531 aaKnown RBP4.56□□□□□ -1.68
CD44-220ENST00000525688 NR2C2P49116 596 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 PEX5P50542 639 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 ARSEP51690 589 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 CSNK2A1P68400 391 aaPredicted RBP4.56□□□□□ -1.68
CD44-220ENST00000525688 ROR2Q01974 943 aaKnown RBP4.56□□□□□ -1.68
CD44-220ENST00000525688 GPS2Q13227 327 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 KARSQ15046 597 aaKnown RBP4.56□□□□□ -1.68
CD44-220ENST00000525688 DLG2Q15700 870 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 TAZQ16635 292 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 DECR1Q16698 335 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 FASTKD1Q53R41 847 aaKnown RBP4.56□□□□□ -1.68
CD44-220ENST00000525688 IGSF11Q5DX21 431 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 MDH1BQ5I0G3 518 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 FNBP1LQ5T0N5 605 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 LCE5AQ5TCM9 118 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 NHLRC1Q6VVB1 395 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 HAUS6Q7Z4H7 955 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 ZC3HC1Q86WB0 502 aaKnown RBP4.56□□□□□ -1.68
CD44-220ENST00000525688 PHC2Q8IXK0 858 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 DSELQ8IZU8 1212 aa4.56□□□□□ -1.68
CD44-220ENST00000525688 BEST3Q8N1M1 668 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms