RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 URM1Q9BTM9 101 aaKnown RBP3.41□□□□□ -1.86
CD44-217ENST00000525348 MXD3Q9BW11 206 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 TEX12Q9BXU0 123 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 THAP2Q9H0W7 228 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 VCX3BQ9H321 246 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 GOLPH3LQ9H4A5 285 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 PANK3Q9H999 370 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 SEPT10Q9P0V9 454 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 EPS15L1Q9UBC2 864 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 LCMT1Q9UIC8 334 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 FBXO2Q9UK22 296 aaPredicted RBP3.41□□□□□ -1.86
CD44-217ENST00000525348 CCPG1Q9ULG6 757 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 ZNF510Q9Y2H8 683 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 EEA1Q15075 1411 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 ABCA5Q8WWZ7 1642 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 MADDQ8WXG6 1647 aa3.41□□□□□ -1.86
CD44-217ENST00000525348 LOC100509620A0A075B734 347 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 RTCAO00442 366 aaKnown RBP3.4□□□□□ -1.87
CD44-217ENST00000525348 MCF2LO15068 1137 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 PI15O43692 258 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 NMT2O60551 498 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 TSPAN1O60635 241 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 TBCAO75347 108 aaKnown RBP3.4□□□□□ -1.87
CD44-217ENST00000525348 GCFC2P16383 781 aaKnown RBP3.4□□□□□ -1.87
CD44-217ENST00000525348 ZNF10P21506 573 aaPredicted RBP3.4□□□□□ -1.87
CD44-217ENST00000525348 U2AF2P26368 475 aaKnown RBP eCLIP3.4□□□□□ -1.87
CD44-217ENST00000525348 ACTN2P35609 894 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 EIF2DP41214 584 aaKnown RBP3.4□□□□□ -1.87
CD44-217ENST00000525348 MNDAP41218 407 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 SLC9A3P48764 834 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 MAZP56270 477 aaKnown RBP3.4□□□□□ -1.87
CD44-217ENST00000525348 POLR2FP61218 127 aaKnown RBP3.4□□□□□ -1.87
CD44-217ENST00000525348 KRT83P78385 493 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 BAATQ14032 418 aaPredicted RBP3.4□□□□□ -1.87
CD44-217ENST00000525348 SGSM1Q2NKQ1 1148 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 C15orf59Q2T9L4 293 aaPredicted RBP3.4□□□□□ -1.87
CD44-217ENST00000525348 CAVIN4Q5BKX8 364 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 C20orf194Q5TEA3 1177 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 DOK6Q6PKX4 331 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 TMEM207Q6UWW9 146 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 SYT10Q6XYQ8 523 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 HOGA1Q86XE5 327 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 C10orf67Q8IYJ2 551 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 CDK20Q8IZL9 346 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 PDCL2Q8N4E4 241 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 EXD1Q8NHP7 514 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 FAM222BQ8WU58 562 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 CCDC107Q8WV48 283 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 C10orf90Q96M02 699 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 FAM20AQ96MK3 541 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 ABHD1Q96SE0 405 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 OPA3Q9H6K4 179 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 VCPKMTQ9H867 229 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 DBNDD1Q9H9R9 158 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 GIMAP4Q9NUV9 329 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 MRGBPQ9NV56 204 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 SPHK1Q9NYA1 384 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 LAMP5Q9UJQ1 280 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 GRID1Q9ULK0 1009 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 STUB1Q9UNE7 303 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 SMAD5-AS1Q9Y6J3 95 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 TDRD15B5MCY1 1934 aaKnown RBP3.4□□□□□ -1.87
CD44-217ENST00000525348 PTPRMP28827 1452 aa3.4□□□□□ -1.87
CD44-217ENST00000525348 CUX1P39880 1505 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.39□□□□□ -1.87
CD44-217ENST00000525348 GLOD5A6NK44 160 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 MEIS2O14770 477 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 AHCYL1O43865 530 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 BEST1O76090 585 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 GFPT2O94808 682 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 OLFM2O95897 454 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 HAPLN1P10915 354 aaPredicted RBP3.39□□□□□ -1.87
CD44-217ENST00000525348 SCG2P13521 617 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 DARSP14868 501 aaKnown RBP3.39□□□□□ -1.87
CD44-217ENST00000525348 CYP2A7P20853 494 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 CDH3P22223 829 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 HSPA1LP34931 641 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 HSPA4P34932 840 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 HSD17B2P37059 387 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 GSDMDP57764 484 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 HERV-K104P61576 105 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 CCDC173Q0VFZ6 552 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 STK4Q13043 487 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 DPYSQ14117 519 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 ODF4Q2M2E3 257 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 UGT3A2Q3SY77 523 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 FASTKD1Q53R41 847 aaKnown RBP3.39□□□□□ -1.87
CD44-217ENST00000525348 SLC25A47Q6Q0C1 308 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 METTL7BQ6UX53 244 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 LRRC31Q6UY01 552 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 ARHGAP22Q7Z5H3 698 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 TAGAPQ8N103 731 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 NAT8LQ8N9F0 302 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 IQUBQ8NA54 791 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 SPC24Q8NBT2 197 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 MCUQ8NE86 351 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 OR8H1Q8NGG4 311 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 CFAP61Q8NHU2 1237 aa3.39□□□□□ -1.87
CD44-217ENST00000525348 VANGL1Q8TAA9 524 aaPredicted RBP3.39□□□□□ -1.87
CD44-217ENST00000525348 FAM81AQ8TBF8 368 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms