RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CLPXO76031 633 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 C6orf47O95873 294 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 HLA-EP13747 358 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 ACTR1BP42025 376 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 ACTR1AP61163 376 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 PPP2R2BQ00005 443 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 RING1Q06587 406 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 DNASE1L3Q13609 305 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 RAB39AQ14964 217 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 CYBRD1Q53TN4 286 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 SPIN4Q56A73 249 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 FAM91A1Q658Y4 838 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 BICRALQ6AI39 1079 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 MAMDC4Q6UXC1 1216 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 DPY19L3Q6ZPD9 716 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 USP43Q70EL4 1123 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 MEIOBQ8N635 442 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 AQP11Q8NBQ7 271 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 ZNF248Q8NDW4 579 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 GPR151Q8TDV0 419 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 GEMIN6Q8WXD5 167 aaKnown RBP12.31□□□□□ -0.44
USP53-209ENST00000514665 GAL3ST1Q99999 423 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 CCM2Q9BSQ5 444 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 ANKRA2Q9H9E1 313 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 POPDC3Q9HBV1 291 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 EMCNQ9ULC0 261 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 CFL2Q9Y281 166 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 MYH4Q9Y623 1939 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 NOS1APO75052 506 aaPredicted RBP12.31□□□□□ -0.44
USP53-209ENST00000514665 H1F0P07305 194 aaKnown RBP12.31□□□□□ -0.44
USP53-209ENST00000514665 ALAS2P22557 587 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 CDKN1CP49918 316 aaPredicted RBP12.31□□□□□ -0.44
USP53-209ENST00000514665 RAB8AP61006 207 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 ZNF829Q3KNS6 432 aaPredicted RBP12.31□□□□□ -0.44
USP53-209ENST00000514665 C6orf141Q5SZD1 244 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 PM20D1Q6GTS8 502 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 TMEM126BQ8IUX1 230 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 HDDC3Q8N4P3 179 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 TSPEARQ8WU66 669 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 HERVK_113Q902F9 699 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 FAM210AQ96ND0 272 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 SLC29A1Q99808 456 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 TRPV5Q9NQA5 729 aa12.31□□□□□ -0.44
USP53-209ENST00000514665 FAM120CQ9NX05 1096 aaKnown RBP12.31□□□□□ -0.44
USP53-209ENST00000514665 RBM47A0AV96 593 aaKnown RBP12.3□□□□□ -0.44
USP53-209ENST00000514665 MCIDASD6RGH6 385 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 PPP6CO00743 305 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 MATN4O95460 622 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 RFC2P35250 354 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 STT3AP46977 705 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 ERVK-21P61565 698 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 TSTQ16762 297 aaKnown RBP12.3□□□□□ -0.44
USP53-209ENST00000514665 TYSND1Q2T9J0 566 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 C18orf21Q32NC0 220 aaPredicted RBP12.3□□□□□ -0.44
USP53-209ENST00000514665 TAF8Q7Z7C8 310 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 COX18Q8N8Q8 333 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 TRIB2Q92519 343 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 PDCD10Q9BUL8 212 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 IFT27Q9BW83 186 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 SNX7Q9UNH6 387 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 DNAJC25-GNG10A0A024R161 153 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 C2orf78A6NCI8 922 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 TLX2O43763 284 aaPredicted RBP12.3□□□□□ -0.44
USP53-209ENST00000514665 PTNP21246 168 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 KCNA5P22460 613 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 CCR8P51685 355 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 RTP2Q5QGT7 225 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 TPRG1LQ5T0D9 272 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 LIN54Q6MZP7 749 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 FRRS1Q6ZNA5 592 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 CMTR2Q8IYT2 770 aaKnown RBP12.3□□□□□ -0.44
USP53-209ENST00000514665 MINDY1Q8N5J2 469 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 PHC3Q8NDX5 983 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 C7orf57Q8NEG2 295 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 GINS4Q9BRT9 223 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 SLC28A3Q9HAS3 691 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 MRPS30Q9NP92 439 aaKnown RBP12.3□□□□□ -0.44
USP53-209ENST00000514665 MKL2Q9ULH7 1088 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 PLAGL1Q9UM63 463 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 PPIEQ9UNP9 301 aaKnown RBP12.3□□□□□ -0.44
USP53-209ENST00000514665 POFUT2Q9Y2G5 429 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 TMEM98Q9Y2Y6 226 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 TMED5Q9Y3A6 229 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 STON1Q9Y6Q2 735 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 GLOD5A6NK44 160 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 TLR4O00206 839 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 ALPPL2P10696 532 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 CSNK2A2P19784 350 aaPredicted RBP12.3□□□□□ -0.44
USP53-209ENST00000514665 VIPR1P32241 457 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 GPR68Q15743 365 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 ATP6AP1Q15904 470 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 NDUFA5Q16718 116 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 ZNF648Q5T619 568 aaPredicted RBP12.3□□□□□ -0.44
USP53-209ENST00000514665 KIAA1614Q5VZ46 1190 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 FAM43BQ6ZT52 329 aaPredicted RBP12.3□□□□□ -0.44
USP53-209ENST00000514665 OR4C6Q8NH72 309 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 PTERQ96BW5 349 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 CMTM7Q96FZ5 175 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 SRMSQ9H3Y6 488 aa12.3□□□□□ -0.44
USP53-209ENST00000514665 DNAJC27Q9NZQ0 273 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms