RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 RPS3AP61247 264 aaKnown RBP12.78□□□□□ -0.36
TCOF1-213ENST00000514442 HERVK_113P63132 956 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 KCNAB2Q13303 367 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 CLCA4Q14CN2 919 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 SUZ12Q15022 739 aaKnown RBP12.78□□□□□ -0.36
TCOF1-213ENST00000514442 SYVN1Q86TM6 617 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 NOXA1Q86UR1 476 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 FAM20CQ8IXL6 584 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 CADM2Q8N3J6 435 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 ZCCHC10Q8TBK6 192 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 MZB1Q8WU39 189 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 FNDC11Q9BVV2 318 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 GTPBP2Q9BX10 602 aaKnown RBP12.78□□□□□ -0.36
TCOF1-213ENST00000514442 ERVK-6Q9BXR3 956 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 BEX2Q9BXY8 128 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 FAM118AQ9NWS6 357 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 RPS3P23396 243 aaKnown RBP eCLIP12.78□□□□□ -0.36
TCOF1-213ENST00000514442 ZNF252P-AS1Q0IIN9 211 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 RABL3Q5HYI8 236 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 SPARTQ8N0X7 666 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 CNIH3Q8TBE1 160 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 SLC22A17Q8WUG5 538 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 LCN9Q8WX39 176 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 TXNDC15Q96J42 360 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 C12orf66Q96MD2 445 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 ERMAPQ96PL5 475 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-213ENST00000514442 RGS17Q9UGC6 210 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-213ENST00000514442 FBXW2Q9UKT8 454 aa12.78□□□□□ -0.36
TCOF1-213ENST00000514442 SLC1A7O00341 560 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 CASKO14936 926 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 SNX4O95219 450 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 HLA-EP13747 358 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 ITGA2P17301 1181 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 MADCAM1Q13477 382 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 LY6G5CQ5SRR4 150 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 TRPV1Q8NER1 839 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 OR13F1Q8NGS4 319 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 PIH1D2Q8WWB5 315 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 DEDD2Q8WXF8 326 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 SLC38A4Q969I6 547 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 MS4A4AQ96JQ5 239 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 TTYH1Q9H313 450 aaPredicted RBP12.77□□□□□ -0.36
TCOF1-213ENST00000514442 ABCG2Q9UNQ0 655 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 N4BP2Q86UW6 1770 aaPredicted RBP12.77□□□□□ -0.36
TCOF1-213ENST00000514442 PLOD2O00469 737 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 ZNF623O75123 536 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 HMGCS1Q01581 520 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 MXD1Q05195 221 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 FAM174BQ3ZCQ3 159 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 LRRC66Q68CR7 880 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 SPATA5L1Q9BVQ7 753 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 BRINP2Q9C0B6 783 aa12.77□□□□□ -0.36
TCOF1-213ENST00000514442 NHSL1Q5SYE7 1610 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 C2orf78A6NCI8 922 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 AXIN1O15169 862 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 HOXD11P31277 338 aaPredicted RBP12.77□□□□□ -0.37
TCOF1-213ENST00000514442 LAPTM5Q13571 262 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 PDGFRLQ15198 375 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 UXS1Q8NBZ7 420 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 WFIKKN2Q8TEU8 576 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 GPR22Q99680 433 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 RACGAP1Q9H0H5 632 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 TMLHEQ9NVH6 421 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 RDH8Q9NYR8 311 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 POLR1DQ9Y2S0 133 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 CFAP20Q9Y6A4 193 aaKnown RBP12.77□□□□□ -0.37
TCOF1-213ENST00000514442 A0A0G2JN53 185 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 CCNDBP1O95273 360 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 ACP5P13686 325 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 CASP9P55211 416 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 ILF3Q12906 894 aaKnown RBP eCLIP12.77□□□□□ -0.37
TCOF1-213ENST00000514442 E2F2Q14209 437 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.77□□□□□ -0.37
TCOF1-213ENST00000514442 SLC43A3Q8NBI5 491 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 EEF1AKMT1Q8WVE0 214 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 AGPAT4Q9NRZ5 378 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 ZDHHC3Q9NYG2 299 aa12.77□□□□□ -0.37
TCOF1-213ENST00000514442 DDX60Q8IY21 1712 aaKnown RBP12.77□□□□□ -0.37
TCOF1-213ENST00000514442 A0A1W2PP18 115 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 A6NL46 340 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 PGGT1BP53609 377 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 NIPAL4Q0D2K0 466 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 HSPB3Q12988 150 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 PPP1R3AQ16821 1122 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 ATAD3CQ5T2N8 411 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 TTC9BQ8N6N2 239 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 C9orf43Q8TAL5 461 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 ZNF607Q96SK3 696 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 ANKRA2Q9H9E1 313 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 MEAF6Q9HAF1 191 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 EMC3Q9P0I2 261 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 FNIP2Q9P278 1114 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 EIF3KQ9UBQ5 218 aaKnown RBP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 LRRC72A6NJI9 287 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 OR6A2O95222 327 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 PPIBP23284 216 aaKnown RBP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 UQCRC1P31930 480 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 STAT5AP42229 794 aa12.76□□□□□ -0.37
TCOF1-213ENST00000514442 GRSF1Q12849 480 aaKnown RBP eCLIP12.76□□□□□ -0.37
TCOF1-213ENST00000514442 MTAPQ13126 283 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms