RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 MFAP5Q13361 173 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 ZNF169Q14929 603 aaPredicted RBP12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 SYT16Q17RD7 645 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 THEMIS2Q5TEJ8 643 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 MBOAT1Q6ZNC8 495 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 LINC00696Q6ZRV3 163 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 UBE2R2Q712K3 238 aaPredicted RBP12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 VN1R4Q7Z5H5 301 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 KCNMB4Q86W47 210 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 KBTBD2Q8IY47 623 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 C2CD4AQ8NCU7 369 aaPredicted RBP12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 ST6GALNAC3Q8NDV1 305 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 DNAJB14Q8TBM8 379 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 ACTRT1Q8TDG2 376 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 GRK7Q8WTQ7 553 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 PSMF1Q92530 271 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 MMABQ96EY8 250 aaPredicted RBP12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 OSBPL9Q96SU4 736 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 NDNQ99608 321 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 MKKSQ9NPJ1 570 aaPredicted RBP12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 CCDC177Q9NQR7 707 aaPredicted RBP12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 IARS2Q9NSE4 1012 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 ADAMTS6Q9UKP5 1117 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 SH2B3Q9UQQ2 575 aa12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 MRPS2Q9Y399 296 aaKnown RBP12.35□□□□□ -0.43
HMGCS1-205ENST00000508319 IGHV1-45A0A0A0MS14 117 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 GOLGA6L10A0A0M3HER8 536 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 H7BY64 318 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 TXNDC9O14530 226 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 STATHP02808 62 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 ANXA5P08758 320 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 PRR35P0CG20 571 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 PGAM1P18669 254 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 EMP2P54851 167 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 DHX9Q08211 1270 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 CDC16Q13042 620 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 FAM53BQ14153 422 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 TLR1Q15399 786 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 MSS51Q4VC12 460 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 RBM20Q5T481 1227 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 FAAH2Q6GMR7 532 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 NDUFAF7Q7L592 441 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 SLC35F6Q8N357 371 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 BRIX1Q8TDN6 353 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 GRHL3Q8TE85 626 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 PRAP1Q96NZ9 151 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 LMF1Q96S06 567 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 EBNA1BP2Q99848 306 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 YIPF2Q9BWQ6 316 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 AGPAT4Q9NRZ5 378 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 TRMT6Q9UJA5 497 aaKnown RBP12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 PDE10AQ9Y233 779 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 SLC5A6Q9Y289 635 aa12.34□□□□□ -0.43
HMGCS1-205ENST00000508319 LOC102723996A0A087X1L8 192 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 CES2O00748 559 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 PCDH17O14917 1159 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 CLDN1O95832 211 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 SERPINA7P05543 415 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 CELA2AP08217 269 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 FDXRP22570 491 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 GABRB3P28472 473 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 CDKN2DP55273 166 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 MAT1AQ00266 395 aaKnown RBP12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 SP140Q13342 867 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 PTK6Q13882 451 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 ELOAQ14241 798 aaKnown RBP12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 PCOLCEQ15113 449 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 PPP1R7Q15435 360 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 LRRC8EQ6NSJ5 796 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 TMEM205Q6UW68 189 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 PRSS41Q7RTY9 318 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 CNTN4Q8IWV2 1026 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 SHISA5Q8N114 240 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 CATSPER1Q8NEC5 780 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 EEF1AKMT1Q8WVE0 214 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 FAR1Q8WVX9 515 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 C5orf34Q96MH7 638 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 PHF12Q96QT6 1004 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 SLX1AQ9BQ83 275 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 DDX47Q9H0S4 455 aaKnown RBP12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 TMEM184CQ9NVA4 438 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 RIC8BQ9NVN3 520 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 SLC17A6Q9P2U8 582 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 SNX12Q9UMY4 172 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 CROCCQ5TZA2 2017 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 SCN2AQ99250 2005 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 SCN3AQ9NY46 2000 aa12.33□□□□□ -0.44
HMGCS1-205ENST00000508319 LRBAP50851 2863 aa12.32□□□□□ -0.44
HMGCS1-205ENST00000508319 KCNE1BA0A087WTH5 132 aa12.32□□□□□ -0.44
HMGCS1-205ENST00000508319 DNALI1O14645 258 aaPredicted RBP12.32□□□□□ -0.44
HMGCS1-205ENST00000508319 NSA2O95478 260 aaKnown RBP12.32□□□□□ -0.44
HMGCS1-205ENST00000508319 TTC4O95801 387 aa12.32□□□□□ -0.44
HMGCS1-205ENST00000508319 TSPAN12O95859 305 aa12.32□□□□□ -0.44
HMGCS1-205ENST00000508319 C8GP07360 202 aa12.32□□□□□ -0.44
HMGCS1-205ENST00000508319 HEXBP07686 556 aa12.32□□□□□ -0.44
HMGCS1-205ENST00000508319 HRH2P25021 359 aa12.32□□□□□ -0.44
HMGCS1-205ENST00000508319 CXCR2P25025 360 aa12.32□□□□□ -0.44
HMGCS1-205ENST00000508319 RPS15AP62244 130 aaKnown RBP12.32□□□□□ -0.44
HMGCS1-205ENST00000508319 CSNK1G2P78368 415 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms