RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TAF10Q12962 218 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 CAPRIN1Q14444 709 aaKnown RBP3.04□□□□□ -1.92
VPS50-219ENST00000495039 PHKG1Q16816 387 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 KRBOX4Q5JUW0 171 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 LGI2Q8N0V4 545 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 OR4K1Q8NGD4 311 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 OR52N5Q8NH56 324 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 SPSB1Q96BD6 273 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 OTUB1Q96FW1 271 aaPredicted RBP3.04□□□□□ -1.92
VPS50-219ENST00000495039 FAM20AQ96MK3 541 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 MUS81Q96NY9 551 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 LRRC3BQ96PB8 259 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 SLC25A23Q9BV35 468 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 AP1M1Q9BXS5 423 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 PRRG4Q9BZD6 226 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 CPVLQ9H3G5 476 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 FAM207AQ9NSI2 230 aaPredicted RBP3.04□□□□□ -1.92
VPS50-219ENST00000495039 P4HTMQ9NXG6 502 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 GRID1Q9ULK0 1009 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 STUB1Q9UNE7 303 aa3.04□□□□□ -1.92
VPS50-219ENST00000495039 AP5Z1O43299 807 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 CYP2A7P20853 494 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 PRKACGP22612 351 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 ZBTB25P24278 435 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 ALDH3A2P51648 485 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 ITGA7Q13683 1181 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 XKR3Q5GH77 459 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 SLC35D3Q5M8T2 416 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 ERN2Q76MJ5 926 aaKnown RBP3.03□□□□□ -1.92
VPS50-219ENST00000495039 ADCK2Q7Z695 626 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 TLK2Q86UE8 772 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 NDUFAF2Q8N183 169 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 RYBPQ8N488 228 aaPredicted RBP3.03□□□□□ -1.92
VPS50-219ENST00000495039 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.03□□□□□ -1.92
VPS50-219ENST00000495039 OR10G8Q8NGN5 311 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 OR13C3Q8NGS6 347 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 LRRC15Q8TF66 581 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 SMAP2Q8WU79 429 aaPredicted RBP3.03□□□□□ -1.92
VPS50-219ENST00000495039 PIGBQ92521 554 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 EXT2Q93063 718 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 FAM71F1Q96KD3 344 aaPredicted RBP3.03□□□□□ -1.92
VPS50-219ENST00000495039 OR2B2Q9GZK3 357 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 FAM49AQ9H0Q0 323 aaPredicted RBP3.03□□□□□ -1.92
VPS50-219ENST00000495039 GNB4Q9HAV0 340 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 PPANQ9NQ55 473 aaKnown RBP3.03□□□□□ -1.92
VPS50-219ENST00000495039 PFDN4Q9NQP4 134 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 TXNDC16Q9P2K2 825 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 TNNQ9UQP3 1299 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 WDR83OSQ9Y284 106 aa3.03□□□□□ -1.92
VPS50-219ENST00000495039 ARPC2O15144 300 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 EPHB6O15197 1021 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 RECQL5O94762 991 aaPredicted RBP3.02□□□□□ -1.93
VPS50-219ENST00000495039 PENKP01210 267 aaPredicted RBP3.02□□□□□ -1.93
VPS50-219ENST00000495039 CSN3P07498 182 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 FOLR2P14207 255 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 FDPSP14324 419 aaKnown RBP3.02□□□□□ -1.93
VPS50-219ENST00000495039 GP9P14770 177 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 LEPRP48357 1165 aaKnown RBP3.02□□□□□ -1.93
VPS50-219ENST00000495039 ZNF41P51814 821 aaPredicted RBP3.02□□□□□ -1.93
VPS50-219ENST00000495039 SQLEQ14534 574 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 HERC3Q15034 1050 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 HYAL4Q2M3T9 481 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 PDLIM3Q53GG5 364 aaPredicted RBP3.02□□□□□ -1.93
VPS50-219ENST00000495039 LCN1P1Q5VSP4 162 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 SLFN11Q7Z7L1 901 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 MMD2Q8IY49 270 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 KIRREL3Q8IZU9 778 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 GPD1LQ8N335 351 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 KIF18AQ8NI77 898 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 KCNE4Q8WWG9 221 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 TOMM40LQ969M1 308 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 SIPA1Q96FS4 1042 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 SLC45A3Q96JT2 553 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 FER1L6-AS2Q96M78 137 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 RAB3IPQ96QF0 476 aaPredicted RBP3.02□□□□□ -1.93
VPS50-219ENST00000495039 FAM129AQ9BZQ8 928 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 MTMR12Q9C0I1 747 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 ZMYND12Q9H0C1 365 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 ST6GALNAC4Q9H4F1 302 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 TLE6Q9H808 572 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 XAB2Q9HCS7 855 aaKnown RBP3.02□□□□□ -1.93
VPS50-219ENST00000495039 GSN-AS1Q9NRJ2 163 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 GIMAP2Q9UG22 337 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 LIPGQ9Y5X9 500 aa3.02□□□□□ -1.93
VPS50-219ENST00000495039 A0A1W2PPK0 400 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 CASTOR2A6NHX0 329 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 GLRA3O75311 464 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 RPS6KA5O75582 802 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 DDHD2O94830 711 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 QDPRP09417 244 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 MYL6BP14649 208 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 DARSP14868 501 aaKnown RBP3.01□□□□□ -1.93
VPS50-219ENST00000495039 EPCAMP16422 314 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 IL4RP24394 825 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 PTAFRP25105 342 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 PSMA3P25788 255 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 HSD17B3P37058 310 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 ZFP36L2P47974 494 aaKnown RBP3.01□□□□□ -1.93
VPS50-219ENST00000495039 GCNT1Q02742 428 aa3.01□□□□□ -1.93
VPS50-219ENST00000495039 EIF4EBP2Q13542 120 aaPredicted RBP3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms