RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 PTERQ96BW5 349 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 TRIM4Q9C037 500 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 ZNF304Q9HCX3 659 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 NINJ2Q9NZG7 142 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 RELNP78509 3460 aa17.26■□□□□ 0.35
COL9A3-214ENST00000490398 MED13Q9UHV7 2174 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 PCM1Q15154 2024 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 CCDC88CQ9P219 2028 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 A0A0A6YYC8 382 aaPredicted RBP17.25■□□□□ 0.35
COL9A3-214ENST00000490398 A6NL46 340 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 VSTM2BA6NLU5 285 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 MKRN2OSH3BPM6 223 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 I3L1I5 382 aaPredicted RBP17.25■□□□□ 0.35
COL9A3-214ENST00000490398 ALOX12BO75342 701 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 EFNA3P52797 238 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 RELAQ04206 551 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 RAPSNQ13702 412 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 ZKSCAN8Q15776 578 aaPredicted RBP17.25■□□□□ 0.35
COL9A3-214ENST00000490398 SYT16Q17RD7 645 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 MUM1Q2TAK8 710 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 LACTB2Q53H82 288 aaPredicted RBP17.25■□□□□ 0.35
COL9A3-214ENST00000490398 VWA2Q5GFL6 755 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 CAPN13Q6MZZ7 669 aaPredicted RBP17.25■□□□□ 0.35
COL9A3-214ENST00000490398 CMC1Q7Z7K0 106 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 RAB43Q86YS6 212 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 PRSS58Q8IYP2 241 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 AMER2Q8N7J2 671 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 ZNF740Q8NDX6 193 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 COL26A1Q96A83 441 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 MRRFQ96E11 262 aaKnown RBP17.25■□□□□ 0.35
COL9A3-214ENST00000490398 SLC26A1Q9H2B4 701 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 POPDC3Q9HBV1 291 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 ACSS2Q9NR19 701 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 P4HTMQ9NXG6 502 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 CTNNAL1Q9UBT7 734 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 NOVA2Q9UNW9 492 aaKnown RBP17.25■□□□□ 0.35
COL9A3-214ENST00000490398 HEATR5BQ9P2D3 2071 aa17.25■□□□□ 0.35
COL9A3-214ENST00000490398 CEACAM4O75871 244 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 ALBP02768 609 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 CCDC166P0CW27 439 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 GDF5P43026 501 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 SLC12A2P55011 1212 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 MAT1AQ00266 395 aaKnown RBP17.24■□□□□ 0.35
COL9A3-214ENST00000490398 DLG1Q12959 904 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 OR4D1Q15615 310 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 FBXO48Q5FWF7 155 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 TCTN3Q6NUS6 607 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 LAPTM4BQ86VI4 370 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 AMER3Q8N944 861 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 FDCSPQ8NFU4 85 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 STT3BQ8TCJ2 826 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 NEIL2Q969S2 332 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 RERGQ96A58 199 aaPredicted RBP17.24■□□□□ 0.35
COL9A3-214ENST00000490398 TM4SF19Q96DZ7 209 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 MOCOSQ96EN8 888 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 TSNARE1Q96NA8 513 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 NUDT9Q9BW91 350 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 TRIM54Q9BYV2 358 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 PCBD2Q9H0N5 130 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 WDR54Q9H977 334 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 TXNDC16Q9P2K2 825 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 OARD1Q9Y530 152 aa17.24■□□□□ 0.35
COL9A3-214ENST00000490398 KCNE1BA0A087WTH5 132 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 HMX2A2RU54 273 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 NCF1BA6NI72 391 aaPredicted RBP17.23■□□□□ 0.35
COL9A3-214ENST00000490398 NCF1CA8MVU1 366 aaPredicted RBP17.23■□□□□ 0.35
COL9A3-214ENST00000490398 SOCS6O14544 535 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 CTAGE8P0CG41 777 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 NCF1P14598 390 aaPredicted RBP17.23■□□□□ 0.35
COL9A3-214ENST00000490398 CD1DP15813 335 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 FBLP22087 321 aaKnown RBP17.23■□□□□ 0.35
COL9A3-214ENST00000490398 CCND1P24385 295 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 KCNC1P48547 511 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 EMP3P54852 163 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 GRTP1Q5TC63 336 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 PRMT9Q6P2P2 845 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 ASB18Q6ZVZ8 466 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 THOC6Q86W42 341 aaKnown RBP17.23■□□□□ 0.35
COL9A3-214ENST00000490398 CTAGE4Q8IX94 777 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 KCT2Q8NC54 265 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 LRRN4CLQ8ND94 238 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 ABHD11Q8NFV4 315 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 OR4K1Q8NGD4 311 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 OR9A4Q8NGU2 314 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 IFT81Q8WYA0 676 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 ANKRD7Q92527 254 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 MMABQ96EY8 250 aaPredicted RBP17.23■□□□□ 0.35
COL9A3-214ENST00000490398 DERL2Q9GZP9 239 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 MLXIPLQ9NP71 852 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 SLC22A14Q9Y267 594 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 HEMK1Q9Y5R4 338 aaPredicted RBP17.23■□□□□ 0.35
COL9A3-214ENST00000490398 HS3ST3B1Q9Y662 390 aa17.23■□□□□ 0.35
COL9A3-214ENST00000490398 ANKRD12Q6UB98 2062 aa17.22■□□□□ 0.35
COL9A3-214ENST00000490398 IGLV3-12A0A075B6K2 115 aa17.22■□□□□ 0.35
COL9A3-214ENST00000490398 TAPBPO15533 448 aa17.22■□□□□ 0.35
COL9A3-214ENST00000490398 ZGLP1P0C6A0 271 aa17.22■□□□□ 0.35
COL9A3-214ENST00000490398 PIM1P11309 404 aaPredicted RBP17.22■□□□□ 0.35
COL9A3-214ENST00000490398 STMN1P16949 149 aa17.22■□□□□ 0.35
COL9A3-214ENST00000490398 HRH2P25021 359 aa17.22■□□□□ 0.35
COL9A3-214ENST00000490398 STX2P32856 288 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms