RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 ZIC2O95409 532 aaPredicted RBP22.28■■□□□ 1.16
C9orf3-215ENST00000478473 OCA2Q04671 838 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 CALCOCO2Q13137 446 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 NAE1Q13564 534 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 PPP1R3AQ16821 1122 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 ATG9BQ674R7 924 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 MBOAT1Q6ZNC8 495 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 STRA8Q7Z7C7 330 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 METTL27Q8N6F8 245 aaPredicted RBP22.28■■□□□ 1.16
C9orf3-215ENST00000478473 RBMXL3Q8N7X1 1067 aaKnown RBP22.28■■□□□ 1.16
C9orf3-215ENST00000478473 AMER3Q8N944 861 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 OR4K1Q8NGD4 311 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 VPS50Q96JG6 964 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 HAUS8Q9BT25 410 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 TRIM54Q9BYV2 358 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 RHOJQ9H4E5 214 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 POPDC3Q9HBV1 291 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 CDC23Q9UJX2 597 aa22.28■■□□□ 1.16
C9orf3-215ENST00000478473 PCDH17O14917 1159 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 IPO13O94829 963 aaKnown RBP22.27■■□□□ 1.16
C9orf3-215ENST00000478473 WISP3O95389 354 aaPredicted RBP22.27■■□□□ 1.16
C9orf3-215ENST00000478473 C1QAP02745 245 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 FBLP22087 321 aaKnown RBP22.27■■□□□ 1.16
C9orf3-215ENST00000478473 PGGT1BP53609 377 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 KLC1Q07866 573 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 NADK2Q4G0N4 442 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 CAPN13Q6MZZ7 669 aaPredicted RBP22.27■■□□□ 1.16
C9orf3-215ENST00000478473 C17orf64Q86WR6 236 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 NKAPQ8N5F7 415 aaKnown RBP22.27■■□□□ 1.16
C9orf3-215ENST00000478473 OR11G2Q8NGC1 345 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 PYROXD1Q8WU10 500 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 ATL1Q8WXF7 558 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 MIEF2Q96C03 454 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 DRC3Q9H069 523 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 ATG10Q9H0Y0 220 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 SOX17Q9H6I2 414 aaPredicted RBP22.27■■□□□ 1.16
C9orf3-215ENST00000478473 SMYD2Q9NRG4 433 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 C14orf105Q9NVL8 296 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 FBXL4Q9UKA2 621 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 SH2B3Q9UQQ2 575 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 MAP4K5Q9Y4K4 846 aa22.27■■□□□ 1.16
C9orf3-215ENST00000478473 RELNP78509 3460 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 FAM95CA0A1B0GW59 222 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 CLEC18AA5D8T8 446 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 A6NL46 340 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 GSTA2P09210 222 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 TAS2R39P59534 338 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 MRPS25P82663 173 aaKnown RBP22.26■■□□□ 1.15
C9orf3-215ENST00000478473 CDKL1Q00532 357 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 IGFBP7Q16270 282 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 NDUFA9Q16795 377 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 JMJD6Q6NYC1 403 aaPredicted RBP22.26■■□□□ 1.15
C9orf3-215ENST00000478473 CLEC18BQ6UXF7 455 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 SYT10Q6XYQ8 523 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 ADCK2Q7Z695 626 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 PLD3Q8IV08 490 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 C17orf53Q8N3J3 647 aaPredicted RBP22.26■■□□□ 1.15
C9orf3-215ENST00000478473 Q8NA96 180 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 CLEC18CQ8NCF0 446 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 PNPLA2Q96AD5 504 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 CRB3Q9BUF7 120 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 MKKSQ9NPJ1 570 aaPredicted RBP22.26■■□□□ 1.15
C9orf3-215ENST00000478473 ARL15Q9NXU5 204 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 IKZF3Q9UKT9 509 aa22.26■■□□□ 1.15
C9orf3-215ENST00000478473 H0YIG0 161 aa22.25■■□□□ 1.15
C9orf3-215ENST00000478473 ALPPP05187 535 aa22.25■■□□□ 1.15
C9orf3-215ENST00000478473 CAV1Q03135 178 aa22.25■■□□□ 1.15
C9orf3-215ENST00000478473 C2orf54Q08AI8 447 aa22.25■■□□□ 1.15
C9orf3-215ENST00000478473 TUBB8Q3ZCM7 444 aa22.25■■□□□ 1.15
C9orf3-215ENST00000478473 VWA2Q5GFL6 755 aa22.25■■□□□ 1.15
C9orf3-215ENST00000478473 TMEM214Q6NUQ4 689 aaKnown RBP22.25■■□□□ 1.15
C9orf3-215ENST00000478473 IGFL2Q6UWQ7 119 aa22.25■■□□□ 1.15
C9orf3-215ENST00000478473 VPS39Q96JC1 886 aa22.25■■□□□ 1.15
C9orf3-215ENST00000478473 OR4K3Q96R72 315 aa22.25■■□□□ 1.15
C9orf3-215ENST00000478473 DPH5Q9H2P9 285 aa22.25■■□□□ 1.15
C9orf3-215ENST00000478473 ABCF3Q9NUQ8 709 aa22.25■■□□□ 1.15
C9orf3-215ENST00000478473 NSA2O95478 260 aaKnown RBP22.24■■□□□ 1.15
C9orf3-215ENST00000478473 CYC1P08574 325 aa22.24■■□□□ 1.15
C9orf3-215ENST00000478473 SSTR1P30872 391 aa22.24■■□□□ 1.15
C9orf3-215ENST00000478473 MLLT10P55197 1068 aa22.24■■□□□ 1.15
C9orf3-215ENST00000478473 RBBP7Q16576 425 aa22.24■■□□□ 1.15
C9orf3-215ENST00000478473 COLEC12Q5KU26 742 aa22.24■■□□□ 1.15
C9orf3-215ENST00000478473 SLC6A19Q695T7 634 aa22.24■■□□□ 1.15
C9orf3-215ENST00000478473 SHISA6Q6ZSJ9 500 aa22.24■■□□□ 1.15
C9orf3-215ENST00000478473 LAPTM4BQ86VI4 370 aa22.24■■□□□ 1.15
C9orf3-215ENST00000478473 CAMKVQ8NCB2 501 aa22.24■■□□□ 1.15
C9orf3-215ENST00000478473 TRPC4Q9UBN4 977 aa22.24■■□□□ 1.15
C9orf3-215ENST00000478473 C3orf18Q9UK00 162 aa22.24■■□□□ 1.15
C9orf3-215ENST00000478473 UTP11Q9Y3A2 253 aaKnown RBP22.24■■□□□ 1.15
C9orf3-215ENST00000478473 SETXQ7Z333 2677 aaKnown RBP22.23■■□□□ 1.15
C9orf3-215ENST00000478473 LOC102723996A0A087X1L8 192 aa22.23■■□□□ 1.15
C9orf3-215ENST00000478473 TCRBV9S1A1TA0A576 114 aa22.23■■□□□ 1.15
C9orf3-215ENST00000478473 FAM159BA6NKW6 160 aa22.23■■□□□ 1.15
C9orf3-215ENST00000478473 LCMT2O60294 686 aaKnown RBP22.23■■□□□ 1.15
C9orf3-215ENST00000478473 HPP00738 406 aa22.23■■□□□ 1.15
C9orf3-215ENST00000478473 ATXN8OSP0DMR3 200 aa22.23■■□□□ 1.15
C9orf3-215ENST00000478473 BCL6P41182 706 aa22.23■■□□□ 1.15
C9orf3-215ENST00000478473 SNRPNP63162 240 aaKnown RBP22.23■■□□□ 1.15
C9orf3-215ENST00000478473 POU4F1Q01851 419 aa22.23■■□□□ 1.15
C9orf3-215ENST00000478473 CEP97Q8IW35 865 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms