RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 CAPN13Q6MZZ7 669 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-212ENST00000477970 SHQ1Q6PI26 577 aaKnown RBP11.8□□□□□ -0.52
PTPRF-212ENST00000477970 ISLR2Q6UXK2 745 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 UNC5DQ6UXZ4 953 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 GOT1L1Q8NHS2 421 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-212ENST00000477970 FBLIM1Q8WUP2 373 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 ARRDC3Q96B67 414 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 NRBF2Q96F24 287 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 TMEM245Q9H330 911 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 TRPV4Q9HBA0 871 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 SGK2Q9HBY8 427 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 PCDHB11Q9Y5F2 797 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 SLC16A6O15403 523 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 SLC16A8O95907 504 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 MT-ND1P03886 318 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 ITGAMP11215 1152 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 BDKRB1P46663 353 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 VMACQ2NL98 169 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 MED27Q6P2C8 311 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 ZNF773Q6PK81 442 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 DHRS4L2Q6PKH6 230 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 DOK6Q6PKX4 331 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 DNAJC14Q6Y2X3 702 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-212ENST00000477970 ZNF551Q7Z340 670 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-212ENST00000477970 PIWIL3Q7Z3Z3 882 aaKnown RBP11.79□□□□□ -0.52
PTPRF-212ENST00000477970 THAP5Q7Z6K1 395 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 CLEC4FQ8N1N0 589 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 C10orf111Q8N326 155 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 OR7G3Q8NG95 312 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 SETD7Q8WTS6 366 aaKnown RBP11.79□□□□□ -0.52
PTPRF-212ENST00000477970 RSPRY1Q96DX4 576 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 EGLN2Q96KS0 407 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 TRIM39Q9HCM9 518 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 FAM118AQ9NWS6 357 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 CDH7Q9ULB5 785 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 V9GYQ6 96 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 C1orf226A1L170 272 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 MAGEB17A8MXT2 336 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 CLIC1O00299 241 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 RNASET2O00584 256 aaKnown RBP11.79□□□□□ -0.52
PTPRF-212ENST00000477970 TRMUO75648 421 aaKnown RBP11.79□□□□□ -0.52
PTPRF-212ENST00000477970 KCNK5O95279 499 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 COX7A2P14406 83 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 NELFEP18615 380 aaKnown RBP11.79□□□□□ -0.52
PTPRF-212ENST00000477970 HPCAL1P37235 193 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 RPL3P39023 403 aaKnown RBP11.79□□□□□ -0.52
PTPRF-212ENST00000477970 DCTP40126 519 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 PREPP48147 710 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 TOP3AQ13472 1001 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-212ENST00000477970 ERN2Q76MJ5 926 aaKnown RBP11.79□□□□□ -0.52
PTPRF-212ENST00000477970 LPCAT2Q7L5N7 544 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 SPRED2Q7Z698 418 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 STK32CQ86UX6 486 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 SYNPOQ8N3V7 929 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 RAB7BQ96AH8 199 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 TBCDQ9BTW9 1192 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 HDAC8Q9BY41 377 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 BHLHE41Q9C0J9 482 aaPredicted RBP11.79□□□□□ -0.52
PTPRF-212ENST00000477970 IL1RAPQ9NPH3 570 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 C3orf18Q9UK00 162 aa11.79□□□□□ -0.52
PTPRF-212ENST00000477970 DCKP27707 260 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 TIA1P31483 386 aaKnown RBP eCLIP11.78□□□□□ -0.52
PTPRF-212ENST00000477970 GRSF1Q12849 480 aaKnown RBP eCLIP11.78□□□□□ -0.52
PTPRF-212ENST00000477970 RPA4Q13156 261 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 ELOAQ14241 798 aaKnown RBP11.78□□□□□ -0.52
PTPRF-212ENST00000477970 CCSMST1Q4G0I0 132 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 TCEAL5Q5H9L2 206 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 C8orf59Q8N0T1 100 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-212ENST00000477970 OR2L2Q8NH16 312 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.78□□□□□ -0.52
PTPRF-212ENST00000477970 ZNF480Q8WV37 535 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 NCLNQ969V3 563 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 PANX1Q96RD7 426 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 TOR3AQ9H497 397 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 MTG2Q9H4K7 406 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 TM9SF3Q9HD45 589 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 AASDHPPTQ9NRN7 309 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 TMEM9Q9P0T7 183 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 ADRB3P13945 408 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 RYKP34925 604 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 SOX11P35716 441 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 PAGE2BQ5JRK9 111 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 CES5AQ6NT32 575 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 CBLL1Q75N03 491 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 EIF3MQ7L2H7 374 aaKnown RBP11.78□□□□□ -0.52
PTPRF-212ENST00000477970 PTOV1Q86YD1 416 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 ZNF555Q8NEP9 628 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 VPS37AQ8NEZ2 397 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 OR7A2PQ8NGA2 310 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 OR9A1PQ8NGU1 263 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 ING5Q8WYH8 240 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 ZNF566Q969W8 418 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 NXPE3Q969Y0 559 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 TMIGD2Q96BF3 282 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 MUS81Q96NY9 551 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 DUSP26Q9BV47 211 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 HSPE1-MOB4S4R3N1 261 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 PRRT4C9JH25 899 aa11.78□□□□□ -0.52
PTPRF-212ENST00000477970 KPNA3O00505 521 aaPredicted RBP11.78□□□□□ -0.52
PTPRF-212ENST00000477970 ENGP17813 658 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms