RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 SYNDIG1Q9H7V2 258 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 TOR4AQ9NXH8 423 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 NPIPB15A6NHN6 443 aaPredicted RBP14.18□□□□□ -0.14
HDAC6-220ENST00000477528 SLC22A1O15245 554 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 CTSAP10619 480 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 CENPAP49450 140 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 EIF2B5Q13144 721 aaKnown RBP14.18□□□□□ -0.14
HDAC6-220ENST00000477528 ZNF630Q2M218 657 aaPredicted RBP14.18□□□□□ -0.14
HDAC6-220ENST00000477528 CTSL3PQ5NE16 218 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 UGT2A3Q6UWM9 527 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 PLEKHM3Q6ZWE6 761 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 CPXM2Q8N436 756 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 ST13P5Q8NFI4 369 aaPredicted RBP14.18□□□□□ -0.14
HDAC6-220ENST00000477528 OR5AK3PQ8NH89 298 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 LCN9Q8WX39 176 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 RGMAQ96B86 450 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 GPR78Q96P69 363 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 SMAD5Q99717 465 aaKnown RBP14.18□□□□□ -0.14
HDAC6-220ENST00000477528 RDH14Q9HBH5 336 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 CALML5Q9NZT1 146 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 TAC3Q9UHF0 121 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 POFUT2Q9Y2G5 429 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 M0QX08 132 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 FBP2O00757 339 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 CACNG3O60359 315 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 DIRAS1O95057 198 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 MYF6P23409 242 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 TAS2R50P59544 299 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 STXBP1P61764 594 aaKnown RBP14.18□□□□□ -0.14
HDAC6-220ENST00000477528 KCNAB2Q13303 367 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 OR52E8Q6IFG1 317 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 ANKRD26P1Q6NSI1 321 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 LHX3Q9UBR4 397 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 FBXW2Q9UKT8 454 aa14.18□□□□□ -0.14
HDAC6-220ENST00000477528 KRT87PA6NCN2 255 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 CSNK1DP48730 415 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 KHKP50053 298 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 PTSQ03393 145 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 ZNF730Q6ZMV8 503 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 DCUN1D3Q8IWE4 304 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 EZH1Q92800 747 aaPredicted RBP14.17□□□□□ -0.14
HDAC6-220ENST00000477528 CWH43Q9H720 699 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 ELOVL2Q9NXB9 296 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 NME6O75414 186 aaPredicted RBP14.17□□□□□ -0.14
HDAC6-220ENST00000477528 AMD1P17707 334 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 FSHRP23945 695 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 COPZ1P61923 177 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 GPM6BQ13491 265 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 SNAPC1Q16533 368 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 CYBRD1Q53TN4 286 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 EGFLAMQ63HQ2 1017 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 TMEM25Q86YD3 366 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 ENKURQ8TC29 256 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 SLC29A1Q99808 456 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 REEP4Q9H6H4 257 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 SOX17Q9H6I2 414 aaPredicted RBP14.17□□□□□ -0.14
HDAC6-220ENST00000477528 MAGIXQ9H6Y5 334 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 LIN28AQ9H9Z2 209 aaKnown RBP14.17□□□□□ -0.14
HDAC6-220ENST00000477528 MRPS30Q9NP92 439 aaKnown RBP14.17□□□□□ -0.14
HDAC6-220ENST00000477528 SIPA1L1O43166 1804 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 SERPINI2O75830 405 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 ACP5P13686 325 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 APLP1P51693 650 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 DOC2AQ14183 400 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 SLC9A5Q14940 896 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 AFMIDQ63HM1 303 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 MSANTD1Q6ZTZ1 278 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 HTR3DQ70Z44 454 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 ZNF597Q96LX8 424 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 CERS4Q9HA82 394 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 HEBP1Q9NRV9 189 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 HLA-EP13747 358 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 CLCNKAP51800 687 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 MFSD6LQ8IWD5 586 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 ISOC1Q96CN7 298 aa14.17□□□□□ -0.14
HDAC6-220ENST00000477528 TTC34A8MYJ7 566 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 ARNTLO00327 626 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 HNRNPA1P09651 372 aaKnown RBP eCLIP14.16□□□□□ -0.14
HDAC6-220ENST00000477528 PSMA1P25786 263 aaKnown RBP14.16□□□□□ -0.14
HDAC6-220ENST00000477528 CRISP3P54108 245 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 ZNF648Q5T619 568 aaPredicted RBP14.16□□□□□ -0.14
HDAC6-220ENST00000477528 MZT2AQ6P582 158 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 C7orf61Q8IZ16 206 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 GPR26Q8NDV2 337 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 NFKBIDQ8NI38 313 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 ZCCHC3Q9NUD5 404 aaKnown RBP14.16□□□□□ -0.14
HDAC6-220ENST00000477528 HEBP2Q9Y5Z4 205 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 TRBC2A0A5B9 178 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 SLC35G6P0C7Q6 338 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 ELK4P28324 431 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 PGFP49763 221 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 RGS8P57771 180 aaPredicted RBP14.16□□□□□ -0.14
HDAC6-220ENST00000477528 RAB15P59190 212 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 GANABQ14697 944 aaKnown RBP14.16□□□□□ -0.14
HDAC6-220ENST00000477528 KIAA1614Q5VZ46 1190 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 TRAF7Q6Q0C0 670 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 TRIM74Q86UV6 250 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 ADGRG5Q8IZF4 528 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 KCNC2Q96PR1 638 aa14.16□□□□□ -0.14
HDAC6-220ENST00000477528 HDHD2Q9H0R4 259 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms