RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 KIAA0408Q6ZU52 694 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 SYDE1Q6ZW31 735 aaPredicted RBP14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 ZADH2Q8N4Q0 377 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 GPATCH11Q8N954 259 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 OR11G2Q8NGC1 345 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 TM9SF4Q92544 642 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 C8orf44Q96CB5 159 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 SNRNP40Q96DI7 357 aaKnown RBP14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 MVB12AQ96EY5 273 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 VPS50Q96JG6 964 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 CCDC138Q96M89 665 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 RUNDC3BQ96NL0 473 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 ILKAPQ9H0C8 392 aaPredicted RBP14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 PLAC1Q9HBJ0 212 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 TRPC4Q9UBN4 977 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 PYCARDQ9ULZ3 195 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 B3GNT3Q9Y2A9 372 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 SAR1BQ9Y6B6 198 aa14.95□□□□□ -0.02
CCDC88B-205ENST00000472524 A0A0A6YYC8 382 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 I3L1I5 382 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 MAP2K7O14733 419 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 ACPPP15309 386 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 ITGA8P53708 1063 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 SP140Q13342 867 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 PDAP1Q13442 181 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 DSG2Q14126 1118 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 HIF1AQ16665 826 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 GARNL3Q5VVW2 1013 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 HIBCHQ6NVY1 386 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 TRMT10BQ6PF06 316 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 AGTRAPQ6RW13 159 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 LAPTM4BQ86VI4 370 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 ANKMY2Q8IV38 441 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 IQCKQ8N0W5 287 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 CISD2Q8N5K1 135 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 WDR83Q9BRX9 315 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 SLC29A3Q9BZD2 475 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 DRC3Q9H069 523 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 ATG10Q9H0Y0 220 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 PARVBQ9HBI1 364 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 ZNF160Q9HCG1 818 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 ASF1BQ9NVP2 202 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 ERRFI1Q9UJM3 462 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 SH2B3Q9UQQ2 575 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 CPAMD8Q8IZJ3 1885 aa14.94□□□□□ -0.02
CCDC88B-205ENST00000472524 IGLV3-12A0A075B6K2 115 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 PABPN1LA6NDY0 278 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 TXNDC9O14530 226 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 FOXS1O43638 330 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 COL8A1P27658 744 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 PAFAH1B1P43034 410 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 EMP2P54851 167 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 ARL4CP56559 192 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 RELAQ04206 551 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 EEF1A2Q05639 463 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 NAE1Q13564 534 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 NDUFA9Q16795 377 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 PHKG1Q16816 387 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 SYT16Q17RD7 645 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 HECTD2Q5U5R9 776 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 AGAP7PQ5VUJ5 663 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 ZNF787Q6DD87 383 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 FAAH2Q6GMR7 532 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 IGFL3Q6UXB1 125 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 C17orf64Q86WR6 236 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 ARHGEF39Q8N4T4 335 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 AMER3Q8N944 861 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 SNF8Q96H20 258 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 THOC3Q96J01 351 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 AGAP4Q96P64 663 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 LHPPQ9H008 270 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 PCBD2Q9H0N5 130 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 TMEM184CQ9NVA4 438 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 MRPS2Q9Y399 296 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 CSAG2Q9Y5P2 127 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 TEX264Q9Y6I9 313 aa14.93□□□□□ -0.02
CCDC88B-205ENST00000472524 FEZF1A0PJY2 475 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 IDSB3KWA1 339 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 CCDC188H7C350 402 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 SLC16A5O15375 505 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 SEC31AO94979 1220 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 CBX6O95503 412 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 CLDN1O95832 211 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 DDAH2O95865 285 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 HPP00738 406 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 HEXBP07686 556 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 HIST1H2AGP0C0S8 130 aaPredicted RBP14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 HIST1H2ADP20671 130 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 HRH2P25021 359 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 VARSP26640 1264 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 SLC26A3P40879 764 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 IL2P60568 153 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 RPS15AP62244 130 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 SNRPNP63162 240 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 CSNK1G2P78368 415 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 MAT1AQ00266 395 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 Q0VFX4 171 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 STEAP4Q687X5 459 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 FAM45BPQ6NSW5 357 aa14.92□□□□□ -0.02
CCDC88B-205ENST00000472524 VN1R4Q7Z5H5 301 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms