RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TTLL8A6PVC2 850 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 MASP2O00187 686 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 P2RX6O15547 441 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 IPO13O94829 963 aaKnown RBP20.19■□□□□ 0.82
HMGB3-205ENST00000455596 ALPPP05187 535 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 ENO2P09104 434 aaPredicted RBP20.19■□□□□ 0.82
HMGB3-205ENST00000455596 ZNF37AP17032 561 aaPredicted RBP20.19■□□□□ 0.82
HMGB3-205ENST00000455596 SAT1P21673 171 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 DSG2Q14126 1118 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 TUBB8Q3ZCM7 444 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 VWA2Q5GFL6 755 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 DUPD1Q68J44 220 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 KIRREL2Q6UWL6 708 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 CAPN12Q6ZSI9 719 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 ARHGEF39Q8N4T4 335 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 MIB2Q96AX9 1013 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 THAP11Q96EK4 314 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 PDLIM5Q96HC4 596 aaKnown RBP20.19■□□□□ 0.82
HMGB3-205ENST00000455596 HAUS8Q9BT25 410 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 YIPF2Q9BWQ6 316 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 ZNF552Q9H707 407 aaPredicted RBP20.19■□□□□ 0.82
HMGB3-205ENST00000455596 TRPC4Q9UBN4 977 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 SH2B3Q9UQQ2 575 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 PLAAQ9Y263 795 aa20.19■□□□□ 0.82
HMGB3-205ENST00000455596 KCNE1BA0A087WTH5 132 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 EIF3HO15372 352 aaKnown RBP eCLIP20.18■□□□□ 0.82
HMGB3-205ENST00000455596 ITGA3P26006 1051 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 GRK3P35626 688 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 CSNK1G2P78368 415 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 ILF2Q12905 390 aaKnown RBP20.18■□□□□ 0.82
HMGB3-205ENST00000455596 FAM53BQ14153 422 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 JMJD6Q6NYC1 403 aaPredicted RBP20.18■□□□□ 0.82
HMGB3-205ENST00000455596 TMEM207Q6UWW9 146 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 PRSS58Q8IYP2 241 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 NKAPQ8N5F7 415 aaKnown RBP20.18■□□□□ 0.82
HMGB3-205ENST00000455596 RBMXL3Q8N7X1 1067 aaKnown RBP20.18■□□□□ 0.82
HMGB3-205ENST00000455596 ATL1Q8WXF7 558 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 FBXL8Q96CD0 374 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 MFRPQ9BY79 579 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 SAYSD1Q9NPB0 183 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 C14orf105Q9NVL8 296 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 C3orf18Q9UK00 162 aa20.18■□□□□ 0.82
HMGB3-205ENST00000455596 NOVA2Q9UNW9 492 aaKnown RBP20.18■□□□□ 0.82
HMGB3-205ENST00000455596 UTP11Q9Y3A2 253 aaKnown RBP20.18■□□□□ 0.82
HMGB3-205ENST00000455596 MYO18BQ8IUG5 2567 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 A0A0A6YYC8 382 aaPredicted RBP20.17■□□□□ 0.82
HMGB3-205ENST00000455596 I3L1I5 382 aaPredicted RBP20.17■□□□□ 0.82
HMGB3-205ENST00000455596 FOXS1O43638 330 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 ALOX12BO75342 701 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 SORBS2O94875 1100 aaKnown RBP20.17■□□□□ 0.82
HMGB3-205ENST00000455596 GUCA1CO95843 209 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 CDH1P12830 882 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 NPPBP16860 134 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 SLC26A3P40879 764 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 ATCAYQ86WG3 371 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 AMER3Q8N944 861 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 OR11G2Q8NGC1 345 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 OR56A3Q8NH54 315 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 CDKL2Q92772 493 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 PYCR2Q96C36 320 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 RAB17Q9H0T7 212 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 RHOJQ9H4E5 214 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 MKKSQ9NPJ1 570 aaPredicted RBP20.17■□□□□ 0.82
HMGB3-205ENST00000455596 MAP4K5Q9Y4K4 846 aa20.17■□□□□ 0.82
HMGB3-205ENST00000455596 FEZF1A0PJY2 475 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 MAP2K7O14733 419 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 FFAR3O14843 346 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 GPR42O15529 346 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 STATHP02808 62 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 SSTR1P30872 391 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 AVPR1BP47901 424 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 CD97P48960 835 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 ZXDCQ2QGD7 858 aaPredicted RBP20.16■□□□□ 0.82
HMGB3-205ENST00000455596 IRAK1BP1Q5VVH5 260 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 SLC6A19Q695T7 634 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 SBSNQ6UWP8 590 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 VN1R4Q7Z5H5 301 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 EFCAB3Q8N7B9 438 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 CPT1CQ8TCG5 803 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 ANKRD7Q92527 254 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 TM9SF4Q92544 642 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 PNPLA2Q96AD5 504 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 VPS39Q96JC1 886 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 FAM129AQ9BZQ8 928 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 SLAMF7Q9NQ25 335 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 SMYD2Q9NRG4 433 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 GRHL1Q9NZI5 618 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 IKZF3Q9UKT9 509 aa20.16■□□□□ 0.82
HMGB3-205ENST00000455596 ACPPP15309 386 aa20.15■□□□□ 0.82
HMGB3-205ENST00000455596 EMP2P54851 167 aa20.15■□□□□ 0.82
HMGB3-205ENST00000455596 SLC12A2P55011 1212 aa20.15■□□□□ 0.82
HMGB3-205ENST00000455596 TAS2R39P59534 338 aa20.15■□□□□ 0.82
HMGB3-205ENST00000455596 ZNF460Q14592 562 aa20.15■□□□□ 0.82
HMGB3-205ENST00000455596 IGFL3Q6UXB1 125 aa20.15■□□□□ 0.82
HMGB3-205ENST00000455596 LAPTM4BQ86VI4 370 aa20.15■□□□□ 0.82
HMGB3-205ENST00000455596 CAMKVQ8NCB2 501 aa20.15■□□□□ 0.82
HMGB3-205ENST00000455596 TGIF2Q9GZN2 237 aa20.15■□□□□ 0.82
HMGB3-205ENST00000455596 POPDC3Q9HBV1 291 aa20.15■□□□□ 0.82
HMGB3-205ENST00000455596 TXNDC16Q9P2K2 825 aa20.15■□□□□ 0.82
HMGB3-205ENST00000455596 MRPS2Q9Y399 296 aaKnown RBP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms