RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 ASB18Q6ZVZ8 466 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 ADAD1Q96M93 576 aaKnown RBP16.7■□□□□ 0.26
PTPRF-209ENST00000438120 C9J4A7 227 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 M0QX08 132 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 TRAPPC6AO75865 159 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 EDNRAP25101 427 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 DNAJA1P31689 397 aaKnown RBP16.7■□□□□ 0.26
PTPRF-209ENST00000438120 GBX2P52951 348 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-209ENST00000438120 PAFAH1B3Q15102 231 aaKnown RBP16.7■□□□□ 0.26
PTPRF-209ENST00000438120 PQLC3Q8N755 202 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 ZNF461Q8TAF7 563 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 TMED9Q9BVK6 235 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 B4GALT6Q9UBX8 382 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 CDC14AQ9UNH5 594 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 SCDO00767 359 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 OR1I1O60431 355 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 H6PDO95479 791 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 H1F0P07305 194 aaKnown RBP16.7■□□□□ 0.26
PTPRF-209ENST00000438120 SCNN1AP37088 669 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 KCNJ5P48544 419 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 AGTR2P50052 363 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 AP1S2P56377 157 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 RASGEF1BQ0VAM2 473 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 QSOX2Q6ZRP7 698 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 CILP2Q8IUL8 1156 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 ASB9Q96DX5 294 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 SERINC1Q9NRX5 453 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 SAGE2PA6NJ88 616 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 SNAI1O95863 264 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-209ENST00000438120 C6orf47O95873 294 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 PRKACGP22612 351 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 RORCP51449 518 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 HSDL2Q6YN16 418 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 USP43Q70EL4 1123 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 DNAJB8Q8NHS0 232 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 JPH3Q8WXH2 748 aaPredicted RBP16.7■□□□□ 0.26
PTPRF-209ENST00000438120 TEX264Q9Y6I9 313 aa16.7■□□□□ 0.26
PTPRF-209ENST00000438120 CLDN25C9JDP6 229 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 GJB5O95377 273 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 GALNT2Q10471 571 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 TNFAIP8L3Q5GJ75 292 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 ARL9Q6T311 187 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 TTYH2Q9BSA4 534 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 PFDN2Q9UHV9 154 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 Q9Y3F1 56 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 C3P01024 1663 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 ROBO1Q9Y6N7 1651 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 SLC22A2O15244 555 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 HSD11B1P28845 292 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 CDK6Q00534 326 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 PDPRQ8NCN5 879 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 SETD7Q8WTS6 366 aaKnown RBP16.69■□□□□ 0.26
PTPRF-209ENST00000438120 MOCS1Q9NZB8 636 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 A0A1B0GVT2 93 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 RABL3Q5HYI8 236 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 COLEC12Q5KU26 742 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 SPANXN4Q5MJ08 99 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 P4HA3Q7Z4N8 544 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 IGDCC3Q8IVU1 814 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 SLC30A8Q8IWU4 369 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 SLC5A11Q8WWX8 675 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 TTTY10Q9BZA0 68 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 PSAT1Q9Y617 370 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 MYOCOSA0A1B0GUC4 107 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 FAM170BA6NMN3 283 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 SEMA3DO95025 777 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 ECHS1P30084 290 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 HOXD13P35453 343 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 SLC3A1Q07837 685 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 Q6ZVL8 140 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 SYVN1Q86TM6 617 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 TMEM156Q8N614 296 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 OR52E4Q8NGH9 312 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 XKR8Q9H6D3 395 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 PDCD5O14737 125 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 SMAD9O15198 467 aaKnown RBP16.69■□□□□ 0.26
PTPRF-209ENST00000438120 STC1P52823 247 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 RPP38P78345 283 aaKnown RBP16.69■□□□□ 0.26
PTPRF-209ENST00000438120 SEMA3AQ14563 771 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 TMIGD1Q6UXZ0 262 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 TICAM1Q8IUC6 712 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 GEMIN6Q8WXD5 167 aaKnown RBP16.69■□□□□ 0.26
PTPRF-209ENST00000438120 CAMK1GQ96NX5 476 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 TMEM248Q9NWD8 314 aa16.69■□□□□ 0.26
PTPRF-209ENST00000438120 F2P00734 622 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 POLR2CP19387 275 aaPredicted RBP16.68■□□□□ 0.26
PTPRF-209ENST00000438120 OR3A3P47888 321 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 OR3A2P47893 321 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 FCHO2Q0JRZ9 810 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 PHOSPHO1Q8TCT1 267 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 SEZ6LQ9BYH1 1024 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 BLOC1S5-TXNDC5H3BN57 136 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 CASRP41180 1078 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 GSK3BP49841 420 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 CMTR2Q8IYT2 770 aaKnown RBP16.68■□□□□ 0.26
PTPRF-209ENST00000438120 PIK3R3Q92569 461 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 DNAJA3Q96EY1 480 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 ANKRA2Q9H9E1 313 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 PCDHGB7Q9Y5F8 929 aa16.68■□□□□ 0.26
PTPRF-209ENST00000438120 FAM72CH0Y354 149 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms