RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CCDC85CA6NKD9 419 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 H2AFB2P0C5Z0 115 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 CKMT1AP12532 417 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 MAPK14Q16539 360 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 LNX2Q8N448 690 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 IL4I1Q96RQ9 567 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 B3GAT2Q9NPZ5 323 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 MS4A12Q9NXJ0 267 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 TLR4O00206 839 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SSX5O60225 188 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 RBBP9O75884 186 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 NUDT14O95848 222 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 HTR1EP28566 365 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 PSMA6P60900 246 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 LCN8Q6JVE9 175 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 OR10H4Q8NGA5 316 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SPPL2BQ8TCT7 592 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 HCAR2Q8TDS4 363 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 ACDQ96AP0 544 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 URM1Q9BTM9 101 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 SNRNP25Q9BV90 132 aaKnown RBP7.01□□□□□ -1.29
VPS53-204ENST00000437048 TKTL2Q9H0I9 626 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SDHAF3Q9NRP4 125 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 BLOC1S4Q9NUP1 217 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 ABI3Q9P2A4 366 aa7.01□□□□□ -1.29
VPS53-204ENST00000437048 SPAM1P38567 509 aa7□□□□□ -1.29
VPS53-204ENST00000437048 LBHQ53QV2 105 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 DPY19L2P1Q6NXN4 242 aa7□□□□□ -1.29
VPS53-204ENST00000437048 C3orf33Q6P1S2 294 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CCBE1Q6UXH8 406 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 NOXA1Q86UR1 476 aa7□□□□□ -1.29
VPS53-204ENST00000437048 OR2L8Q8NGY9 312 aa7□□□□□ -1.29
VPS53-204ENST00000437048 SGTBQ96EQ0 304 aa7□□□□□ -1.29
VPS53-204ENST00000437048 KXD1Q9BQD3 176 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ASPNQ9BXN1 380 aa7□□□□□ -1.29
VPS53-204ENST00000437048 SEMA4CQ9C0C4 833 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ZNF700Q9H0M5 742 aa7□□□□□ -1.29
VPS53-204ENST00000437048 OR10A4Q9H209 315 aa7□□□□□ -1.29
VPS53-204ENST00000437048 SNTG1Q9NSN8 517 aa7□□□□□ -1.29
VPS53-204ENST00000437048 NOP16Q9Y3C1 178 aaKnown RBP7□□□□□ -1.29
VPS53-204ENST00000437048 BTBD17A6NE02 478 aa7□□□□□ -1.29
VPS53-204ENST00000437048 HMX3A6NHT5 357 aa7□□□□□ -1.29
VPS53-204ENST00000437048 BMP8BP34820 402 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CCR10P46092 362 aa7□□□□□ -1.29
VPS53-204ENST00000437048 EFEMP1Q12805 493 aa7□□□□□ -1.29
VPS53-204ENST00000437048 DUSP4Q13115 394 aa7□□□□□ -1.29
VPS53-204ENST00000437048 TRAM2Q15035 370 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ANKDD1AQ495B1 522 aa7□□□□□ -1.29
VPS53-204ENST00000437048 SLC22A25Q6T423 547 aa7□□□□□ -1.29
VPS53-204ENST00000437048 LINGO4Q6UY18 593 aa7□□□□□ -1.29
VPS53-204ENST00000437048 TRIM46Q7Z4K8 759 aa7□□□□□ -1.29
VPS53-204ENST00000437048 BMP8AQ7Z5Y6 402 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CLEC10AQ8IUN9 316 aa7□□□□□ -1.29
VPS53-204ENST00000437048 SMARCD2Q92925 531 aa7□□□□□ -1.29
VPS53-204ENST00000437048 OR14A2Q96R54 314 aa7□□□□□ -1.29
VPS53-204ENST00000437048 PRRT1Q99946 306 aa7□□□□□ -1.29
VPS53-204ENST00000437048 BHLHE41Q9C0J9 482 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 CNOT2Q9NZN8 540 aaKnown RBP7□□□□□ -1.29
VPS53-204ENST00000437048 CNOT6Q9ULM6 557 aaKnown RBP7□□□□□ -1.29
VPS53-204ENST00000437048 LCHNA4D1U4 455 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CCR4P51679 360 aa7□□□□□ -1.29
VPS53-204ENST00000437048 KDELC1Q6UW63 502 aa7□□□□□ -1.29
VPS53-204ENST00000437048 C16orf59Q7L2K0 433 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ZNF467Q7Z7K2 595 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 PHYKPLQ8IUZ5 450 aa7□□□□□ -1.29
VPS53-204ENST00000437048 CRYBG2Q8N1P7 616 aa7□□□□□ -1.29
VPS53-204ENST00000437048 HASPINQ8TF76 798 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ALG3Q92685 438 aa7□□□□□ -1.29
VPS53-204ENST00000437048 P2RY11Q96G91 374 aa7□□□□□ -1.29
VPS53-204ENST00000437048 FUBP3Q96I24 572 aaKnown RBP eCLIP7□□□□□ -1.29
VPS53-204ENST00000437048 SULT4A1Q9BR01 284 aa7□□□□□ -1.29
VPS53-204ENST00000437048 HACL1Q9UJ83 578 aa7□□□□□ -1.29
VPS53-204ENST00000437048 A6NHS1 94 aa7□□□□□ -1.29
VPS53-204ENST00000437048 FOXO6A8MYZ6 492 aa7□□□□□ -1.29
VPS53-204ENST00000437048 NPC1O15118 1278 aa7□□□□□ -1.29
VPS53-204ENST00000437048 GMDSO60547 372 aa7□□□□□ -1.29
VPS53-204ENST00000437048 UPK1BO75841 260 aa7□□□□□ -1.29
VPS53-204ENST00000437048 MLLT1Q03111 559 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 PRKCDQ05655 676 aa7□□□□□ -1.29
VPS53-204ENST00000437048 SLC36A3Q495N2 470 aa7□□□□□ -1.29
VPS53-204ENST00000437048 DEFB106AQ8N104 65 aa7□□□□□ -1.29
VPS53-204ENST00000437048 LIX1Q8N485 282 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ZNF433Q8N7K0 673 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 LILRB4Q8NHJ6 448 aa7□□□□□ -1.29
VPS53-204ENST00000437048 DUSP26Q9BV47 211 aa7□□□□□ -1.29
VPS53-204ENST00000437048 YIPF2Q9BWQ6 316 aa7□□□□□ -1.29
VPS53-204ENST00000437048 GATA5Q9BWX5 397 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 PXMP2Q9NR77 195 aa7□□□□□ -1.29
VPS53-204ENST00000437048 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7□□□□□ -1.29
VPS53-204ENST00000437048 FUOMA2VDF0 154 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ADAM12O43184 909 aa7□□□□□ -1.29
VPS53-204ENST00000437048 SLITRK3O94933 977 aa7□□□□□ -1.29
VPS53-204ENST00000437048 PDHA2P29803 388 aa7□□□□□ -1.29
VPS53-204ENST00000437048 IKBKEQ14164 716 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ZNF267Q14586 743 aaPredicted RBP7□□□□□ -1.29
VPS53-204ENST00000437048 REEP3Q6NUK4 255 aa7□□□□□ -1.29
VPS53-204ENST00000437048 RPL22L1Q6P5R6 122 aaKnown RBP7□□□□□ -1.29
VPS53-204ENST00000437048 ZNF565Q8N9K5 539 aa7□□□□□ -1.29
VPS53-204ENST00000437048 ANKRD53Q8N9V6 530 aa7□□□□□ -1.29
VPS53-204ENST00000437048 OR10R2Q8NGX6 335 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms