RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ALKBH8Q96BT7 664 aaKnown RBP11.89□□□□□ -0.51
USP40-205ENST00000430158 TM4SF19Q96DZ7 209 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 SCYL1Q96KG9 808 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 TEFMQ96QE5 360 aaKnown RBP11.89□□□□□ -0.51
USP40-205ENST00000430158 ASPSCR1Q9BZE9 553 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 EHD1Q9H4M9 534 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 CNOT10Q9H9A5 744 aaKnown RBP11.89□□□□□ -0.51
USP40-205ENST00000430158 PELI2Q9HAT8 420 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 ABCF3Q9NUQ8 709 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 GPRC5BQ9NZH0 403 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 COPG2Q9UBF2 871 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 RARRES3Q9UL19 164 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 TMCO1Q9UM00 188 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 PLLPQ9Y342 182 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 KCNE2Q9Y6J6 123 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 AK5Q9Y6K8 562 aa11.89□□□□□ -0.51
USP40-205ENST00000430158 A0A0J9YVX5 310 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 PABPN1LA6NDY0 278 aaKnown RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 E7EQ34 232 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 H0YGG7 62 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 K7EPI3 171 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 SRPX2O60687 465 aaPredicted RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 MED26O95402 600 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 RPS17P08708 135 aaKnown RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 EZRP15311 586 aaKnown RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 VARSP26640 1264 aaKnown RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 RBMS1P29558 406 aaKnown RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 BCL6P41182 706 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 CCT5P48643 541 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 ARL4DP49703 201 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 PRKAA2P54646 552 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 ITGA1P56199 1179 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 ARF3P61204 181 aaPredicted RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 REEP5Q00765 189 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 TBCCQ15814 346 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 ZC3H12BQ5HYM0 836 aaKnown RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 ZNF385CQ66K41 422 aaPredicted RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 ATG9BQ674R7 924 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 UNQ6494/PRO21346Q6UXR6 183 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 ZFAND4Q86XD8 727 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 PPP1R3BQ86XI6 285 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 KDF1Q8NAX2 398 aaPredicted RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 SNIP1Q8TAD8 396 aaKnown RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 ZBTB9Q96C00 473 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 TLCD1Q96CP7 247 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 APOPT1Q96IL0 206 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 TSNARE1Q96NA8 513 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 ZFYVE21Q9BQ24 234 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 TMBIM4Q9HC24 238 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 ZBTB26Q9HCK0 441 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 GEMIN8Q9NWZ8 242 aaKnown RBP11.88□□□□□ -0.51
USP40-205ENST00000430158 PCTPQ9UKL6 214 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 GRID1Q9ULK0 1009 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 PCDHB3Q9Y5E6 796 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 LAMA5O15230 3695 aa11.88□□□□□ -0.51
USP40-205ENST00000430158 TRBC2A0A5B9 178 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 COPEO14579 308 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 RGS16O15492 202 aaPredicted RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 P2RX6O15547 441 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 CCNT2O60583 730 aaKnown RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 TBX6O95947 436 aaPredicted RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 S100BP04271 92 aaPredicted RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 C1GALT1C1LP0DN25 315 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 GFAPP14136 432 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 GNAZP19086 355 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 ATP5F1P24539 256 aaPredicted RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 RORAP35398 523 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 ETV4P43268 484 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 SCTRP47872 440 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 CCR8P51685 355 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 MEF2AQ02078 507 aaPredicted RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 MPP2Q14168 576 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 PDK4Q16654 411 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 UNC50Q53HI1 259 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 ZYG11AQ6WRX3 759 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 ZNF517Q6ZMY9 492 aaPredicted RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 CROCCP2Q86T23 111 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 MFSD9Q8NBP5 474 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 ZNF483Q8TF39 744 aaPredicted RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 FGF11Q92914 225 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 PHF21BQ96EK2 531 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 THAP11Q96EK4 314 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 MOCOSQ96EN8 888 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 LRFN5Q96NI6 719 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 NSUN5Q96P11 429 aaKnown RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 CCDC86Q9H6F5 360 aaKnown RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 AKIRIN1Q9H9L7 192 aaPredicted RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 SSU72Q9NP77 194 aaKnown RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 THSD1Q9NS62 852 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 ZNF446Q9NWS9 450 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 SENP1Q9P0U3 644 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 SLC17A7Q9P2U7 560 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 SERTAD3Q9UJW9 196 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 ZNF490Q9ULM2 529 aaPredicted RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 DYRK1BQ9Y463 629 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 TNPO3Q9Y5L0 923 aaKnown RBP11.87□□□□□ -0.51
USP40-205ENST00000430158 ACTL7BQ9Y614 415 aa11.87□□□□□ -0.51
USP40-205ENST00000430158 A0A1B0GTL3 188 aa11.86□□□□□ -0.51
USP40-205ENST00000430158 FEZF1A0PJY2 475 aa11.86□□□□□ -0.51
USP40-205ENST00000430158 PPP6CO00743 305 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms