RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ZC3HC1Q86WB0 502 aaKnown RBP3.92□□□□□ -1.78
HMGB3-203ENST00000430118 SIAH3Q8IW03 269 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 APLFQ8IW19 511 aaPredicted RBP3.92□□□□□ -1.78
HMGB3-203ENST00000430118 FOXRED2Q8IWF2 684 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 NHLRC2Q8NBF2 726 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 CCDC112Q8NEF3 446 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 DBF4BQ8NFT6 615 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 OR7G3Q8NG95 312 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 PPP4R1Q8TF05 950 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 SDR42E1Q8WUS8 393 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 CASP10Q92851 521 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 MIB2Q96AX9 1013 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 KXD1Q9BQD3 176 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 RIOK1Q9BRS2 568 aaKnown RBP3.92□□□□□ -1.78
HMGB3-203ENST00000430118 RAB6CQ9H0N0 254 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 ISCUQ9H1K1 167 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 RWDD1Q9H446 243 aaPredicted RBP3.92□□□□□ -1.78
HMGB3-203ENST00000430118 FZD8Q9H461 694 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 TLE6Q9H808 572 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 EPS15L1Q9UBC2 864 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 HEY2Q9UBP5 337 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 ARMCX3Q9UH62 379 aaPredicted RBP3.92□□□□□ -1.78
HMGB3-203ENST00000430118 LCMT1Q9UIC8 334 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 GMEB2Q9UKD1 530 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 ANGPTL2Q9UKU9 493 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 ITGA11Q9UKX5 1188 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 BARX2Q9UMQ3 279 aaPredicted RBP3.92□□□□□ -1.78
HMGB3-203ENST00000430118 SCN10AQ9Y5Y9 1956 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 CCDC171Q6TFL3 1326 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 BRWD1Q9NSI6 2320 aa3.92□□□□□ -1.78
HMGB3-203ENST00000430118 EPG5Q9HCE0 2579 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 VPS13AQ96RL7 3174 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 B4DGG1 531 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 F8VZ95 297 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 J3QR06 171 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 CHUKO15111 745 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 TO15178 435 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 HMMRO75330 724 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 E2F6O75461 281 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 TRIOO75962 3097 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 KCNK5O95279 499 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 PDGFBP01127 241 aaPredicted RBP3.91□□□□□ -1.78
HMGB3-203ENST00000430118 FGF2P09038 288 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 STAG3L1P0CL83 205 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 DNASE1P24855 282 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 TIA1P31483 386 aaKnown RBP eCLIP3.91□□□□□ -1.78
HMGB3-203ENST00000430118 MNAT1P51948 309 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 COL10A1Q03692 680 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 AP1B1Q10567 949 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 KBTBD12Q3ZCT8 623 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 C12orf60Q5U649 245 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ZSCAN25Q6NSZ9 544 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF449Q6P9G9 518 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 CNSTQ6PJW8 725 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 FIGLAQ6QHK4 219 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 SLC36A4Q6YBV0 504 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ZBTB49Q6ZSB9 765 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 MICAL3Q7RTP6 2002 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 PHLDB2Q86SQ0 1253 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 RBM23Q86U06 439 aaKnown RBP3.91□□□□□ -1.78
HMGB3-203ENST00000430118 GPR180Q86V85 440 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 CHERPQ8IWX8 916 aaKnown RBP3.91□□□□□ -1.78
HMGB3-203ENST00000430118 SYCP3Q8IZU3 236 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF444Q8N0Y2 327 aaPredicted RBP3.91□□□□□ -1.78
HMGB3-203ENST00000430118 SLC5A8Q8N695 610 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ARFGAP1Q8N6T3 406 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF611Q8N823 705 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 MAB21L3Q8N8X9 362 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 PPFIBP2Q8ND30 876 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 NEK11Q8NG66 645 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 OCC1Q8TAD7 63 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 SPATA20Q8TB22 786 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 SUSD6Q92537 303 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 DPF1Q92782 380 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ATP6V0A1Q93050 837 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 MOB3AQ96BX8 217 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 SPDL1Q96EA4 605 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 DYNLL2Q96FJ2 89 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 THOC1Q96FV9 657 aaKnown RBP3.91□□□□□ -1.78
HMGB3-203ENST00000430118 PDLIM5Q96HC4 596 aaKnown RBP3.91□□□□□ -1.78
HMGB3-203ENST00000430118 FEVQ99581 238 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ACAT2Q9BWD1 397 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 FTHL17Q9BXU8 183 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 POLDIP3Q9BY77 421 aaKnown RBP3.91□□□□□ -1.78
HMGB3-203ENST00000430118 SPRY4Q9C004 299 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF350Q9GZX5 532 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 FAM234AQ9H0X4 552 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 TMEM206Q9H813 350 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 HHATLQ9HCP6 504 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 COQ3Q9NZJ6 369 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 BAHCC1Q9P281 2608 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 MOSPD1Q9UJG1 213 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 TINAGQ9UJW2 476 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 RAB23Q9ULC3 237 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 MYO6Q9UM54 1294 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 WDR37Q9Y2I8 494 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 KCNK7Q9Y2U2 307 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 LOXL2Q9Y4K0 774 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 DMRT1Q9Y5R6 373 aa3.91□□□□□ -1.78
HMGB3-203ENST00000430118 COX11Q9Y6N1 276 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms