RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CCDC3Q9BQI4 270 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 TUBB1Q9H4B7 451 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 POT1Q9NUX5 634 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 ADPRHL2Q9NX46 363 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 DUSP12Q9UNI6 340 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 ANKRD36A6QL64 1941 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 RNF103-CHMP3A0A140T963 221 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 TRBC2A0A5B9 178 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 ELOVL7A1L3X0 281 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 E7EQ34 232 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 CAPN5O15484 640 aaPredicted RBP8.1□□□□□ -1.11
USP54-203ENST00000418501 CLEC3AO75596 197 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 CPSF4O95639 269 aaKnown RBP8.1□□□□□ -1.11
USP54-203ENST00000418501 LDLRP01130 860 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 ALDOCP09972 364 aaKnown RBP8.1□□□□□ -1.11
USP54-203ENST00000418501 ACADLP28330 430 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 MAPK12P53778 367 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 RHDQ02161 417 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 TCEA2Q15560 299 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 CCDC85BQ15834 202 aaPredicted RBP8.1□□□□□ -1.11
USP54-203ENST00000418501 ZNF423Q2M1K9 1284 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 ZNF621Q6ZSS3 439 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 LAS2Q8IYD9 372 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 C1orf52Q8N6N3 182 aaKnown RBP8.1□□□□□ -1.11
USP54-203ENST00000418501 CAMKVQ8NCB2 501 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 MTERF1Q99551 399 aaKnown RBP8.1□□□□□ -1.11
USP54-203ENST00000418501 ACPTQ9BZG2 426 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 CLMPQ9H6B4 373 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 REEP4Q9H6H4 257 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 SEMA3GQ9NS98 782 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 BTNL2Q9UIR0 455 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 PCDHB3Q9Y5E6 796 aa8.1□□□□□ -1.11
USP54-203ENST00000418501 MAGEB17A8MXT2 336 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 C2orf74A8MZ97 194 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 OR1F1O43749 312 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 JUNP05412 331 aaKnown RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 CDH1P12830 882 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 DRD2P14416 443 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 IGFALSP35858 605 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 AHRP35869 848 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 SSR2P43308 183 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 TSFMP43897 325 aaKnown RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 CLCN2P51788 898 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 POLE2P56282 527 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 RPS13P62277 151 aaKnown RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 CMPK2Q5EBM0 449 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 ANO7Q6IWH7 933 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 GPR153Q6NV75 609 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 AMIGO1Q86WK6 493 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 PACRGLQ8N7B6 248 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 HMGCLL1Q8TB92 370 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 MYOCQ99972 504 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 RPP25Q9BUL9 199 aaKnown RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 OSBPL10Q9BXB5 764 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 MKRN2Q9H000 416 aaKnown RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 SUSD2Q9UGT4 822 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 CYP8B1Q9UNU6 501 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 PCDHGA7Q9Y5G6 932 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 PPP6CO00743 305 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 PDE9AO76083 593 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 GNSP15586 552 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 NDUFV2P19404 249 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 ARL4DP49703 201 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 MRPS35P82673 323 aaKnown RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 DLX2Q07687 328 aaPredicted RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 C2orf80Q0P641 193 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 NDUFA9Q16795 377 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 CAPRIN2Q6IMN6 1127 aaKnown RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 PLA2G15Q8NCC3 412 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 ST13P5Q8NFI4 369 aaPredicted RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 HUS1BQ8NHY5 278 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 UTP4Q969X6 686 aaKnown RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 ERLEC1Q96DZ1 483 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 CLPTM1LQ96KA5 538 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 BTBD9Q96Q07 612 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 NEUROD4Q9HD90 331 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 DMRT3Q9NQL9 472 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 SLC13A4Q9UKG4 626 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 PPP2R1BP30154 601 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 LTBRP36941 435 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 MRPS22P82650 360 aaKnown RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 EEF1AKMT2Q5JPI9 291 aaKnown RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 ABRAXAS1Q6UWZ7 409 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 IQCHQ86VS3 1027 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 GPR156Q8NFN8 814 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 OR5AR1Q8NGP9 310 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 OR9I1Q8NGQ6 314 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 MOAP1Q96BY2 351 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 NAF1Q96HR8 494 aaKnown RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 TBCDQ9BTW9 1192 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 MYNNQ9NPC7 610 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 SPATA6Q9NWH7 488 aaPredicted RBP8.09□□□□□ -1.11
USP54-203ENST00000418501 SIRT5Q9NXA8 310 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 ATP6V1HQ9UI12 483 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 ANGPT4Q9Y264 503 aa8.09□□□□□ -1.11
USP54-203ENST00000418501 FAM220BPB1ANY3 271 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 H0YJX3 145 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 K7ESM1 405 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 PKLRP30613 574 aa8.08□□□□□ -1.12
USP54-203ENST00000418501 GRIA3P42263 894 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms