RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 TRIM73Q86UV7 250 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 NAXDQ8IW45 347 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 FAM20CQ8IXL6 584 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 Q8N9G6 341 aaPredicted RBP13.68□□□□□ -0.22
SF3B1-204ENST00000414963 ZNF740Q8NDX6 193 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 IFI44Q8TCB0 444 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 NCSTNQ92542 709 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 THAP11Q96EK4 314 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 C19orf60Q96EN9 201 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 MAELQ96JY0 434 aaKnown RBP13.68□□□□□ -0.22
SF3B1-204ENST00000414963 CCDC3Q9BQI4 270 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 FAM107BQ9H098 131 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 SPNS1Q9H2V7 528 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 ELOVL6Q9H5J4 265 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 PDP2Q9P2J9 529 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 FTSJ1Q9UET6 329 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 PILRAQ9UKJ1 303 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 APOBEC2Q9Y235 224 aaKnown RBP13.68□□□□□ -0.22
SF3B1-204ENST00000414963 CCL27Q9Y4X3 112 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 COL5A1P20908 1838 aaPredicted RBP13.68□□□□□ -0.22
SF3B1-204ENST00000414963 TLCD2A6NGC4 264 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 C4orf47A7E2U8 309 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 SDHDO14521 159 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 FFAR3O14843 346 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 PIP5K1BO14986 540 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 GPR42O15529 346 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 SH3BP5O60239 455 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 VPS4BO75351 444 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 JUNP05412 331 aaKnown RBP13.67□□□□□ -0.22
SF3B1-204ENST00000414963 HSD3B1P14060 373 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 EZRP15311 586 aaKnown RBP13.67□□□□□ -0.22
SF3B1-204ENST00000414963 MAGP20916 626 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 HSD3B2P26439 372 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 GRK3P35626 688 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 AHRP35869 848 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 SCTRP47872 440 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 HTR6P50406 440 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 ABRAXAS2Q15018 415 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 PDCD2Q16342 344 aaPredicted RBP13.67□□□□□ -0.22
SF3B1-204ENST00000414963 GKAP1Q5VSY0 366 aaPredicted RBP13.67□□□□□ -0.22
SF3B1-204ENST00000414963 IRGCQ6NXR0 463 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 FBXO42Q6P3S6 717 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 TBC1D19Q8N5T2 526 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 GBP7Q8N8V2 638 aaPredicted RBP13.67□□□□□ -0.22
SF3B1-204ENST00000414963 TTLQ8NG68 377 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 BCAS4Q8TDM0 211 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 ACTRT2Q8TDY3 377 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 ZNF473Q8WTR7 871 aaKnown RBP13.67□□□□□ -0.22
SF3B1-204ENST00000414963 C10orf82Q8WW14 230 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 PRR11Q96HE9 360 aaPredicted RBP13.67□□□□□ -0.22
SF3B1-204ENST00000414963 PPM1MQ96MI6 270 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 TRAPPC9Q96Q05 1148 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 CDC6Q99741 560 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 NUF2Q9BZD4 464 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 LRRN3Q9H3W5 708 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 BRF2Q9HAW0 419 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 FARSBQ9NSD9 589 aaKnown RBP13.67□□□□□ -0.22
SF3B1-204ENST00000414963 DCTN4Q9UJW0 460 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 FIS1Q9Y3D6 152 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 GOLGA4Q13439 2230 aaKnown RBP13.67□□□□□ -0.22
SF3B1-204ENST00000414963 DMDP11532 3685 aa13.67□□□□□ -0.22
SF3B1-204ENST00000414963 PCM1Q15154 2024 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 A0A1W2PQM1 296 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 SLC28A1O00337 649 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 NDUFAB1O14561 156 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 HAT1O14929 419 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 TOX3O15405 576 aaPredicted RBP13.66□□□□□ -0.22
SF3B1-204ENST00000414963 LCMT2O60294 686 aaKnown RBP13.66□□□□□ -0.22
SF3B1-204ENST00000414963 CPNE6O95741 557 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 PDYNP01213 254 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 LINC00032P0C843 101 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 CDH3P22223 829 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 CSF2RBP32927 897 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 NEK2P51955 445 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 ARFIP2P53365 341 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 LIMK1P53667 647 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 RPS15AP62244 130 aaKnown RBP13.66□□□□□ -0.22
SF3B1-204ENST00000414963 CCL7P80098 99 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 MEF2AQ02078 507 aaPredicted RBP13.66□□□□□ -0.22
SF3B1-204ENST00000414963 CSTF3Q12996 717 aaKnown RBP13.66□□□□□ -0.22
SF3B1-204ENST00000414963 ZIC1Q15915 447 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 AMZ1Q400G9 498 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 SLC9B1Q4ZJI4 515 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 STPG1Q5TH74 334 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 VWA5B1Q5TIE3 1220 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 FAM219BQ5XKK7 198 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 TMEM71Q6P5X7 295 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 Q6ZSR9 355 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 USP53Q70EK8 1073 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 PRSS42Q7Z5A4 293 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 VN1R5Q7Z5H4 357 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 PIP4P1Q86T03 277 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 ANKS4BQ8N8V4 417 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 ANKRD53Q8N9V6 530 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 MFSD9Q8NBP5 474 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 HUS1BQ8NHY5 278 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 SELENOMQ8WWX9 145 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 CCT6BQ92526 530 aa13.66□□□□□ -0.22
SF3B1-204ENST00000414963 THOC1Q96FV9 657 aaKnown RBP13.66□□□□□ -0.22
SF3B1-204ENST00000414963 TCTN2Q96GX1 697 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms