RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 AIF1P55008 147 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 PYROXD2Q8N2H3 581 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 TMEM39AQ9NV64 488 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 ARHGEF5Q12774 1597 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 FFAR2O15552 330 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 MATN1P21941 496 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 CCR8P51685 355 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 ZNF404Q494X3 552 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 FAM43BQ6ZT52 329 aaPredicted RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC26A9Q7LBE3 791 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 ZFP82Q8N141 532 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 FEM1CQ96JP0 617 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 NIFKQ9BYG3 293 aaKnown RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 RNF6Q9Y252 685 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 C2orf78A6NCI8 922 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 ZNF850A8MQ14 1090 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 CRYZL1O95825 349 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 HDCP19113 662 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 CERS1P27544 350 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 RPIAP49247 311 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 METTL7BQ6UX53 244 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 OR13C3Q8NGS6 347 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC38A3Q99624 504 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC35A5Q9BS91 424 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 SMCO4Q9NRQ5 59 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 FBXO5Q9UKT4 447 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 NCANO14594 1321 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 OTOFQ9HC10 1997 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 RBM47A0AV96 593 aaKnown RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 EDF1O60869 148 aaKnown RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 BMP6P22004 513 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 RAB41Q5JT25 222 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 NOXRED1Q6NXP6 359 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 AGO3Q9H9G7 860 aaKnown RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 KIAA1522Q9P206 1035 aaPredicted RBP13□□□□□ -0.33
CCDC88A-204ENST00000413716 RNF215Q9Y6U7 377 aa13□□□□□ -0.33
CCDC88A-204ENST00000413716 C5orf60A6NFR6 353 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 SERPINF1P36955 418 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 RHDQ02161 417 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 PCBP1Q15365 356 aaKnown RBP eCLIP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 KDELC1Q6UW63 502 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 ZNF367Q7RTV3 350 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 SCRN2Q96FV2 425 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 C7orf26Q96N11 449 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 ALPK1Q96QP1 1244 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 IL4I1Q96RQ9 567 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 BEX2Q9BXY8 128 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 DNAJC5Q9H3Z4 198 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 BEX1Q9HBH7 125 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 KLRF1Q9NZS2 232 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 HEATR1Q9H583 2144 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 PAPSS1O43252 624 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 S1PR1P21453 382 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 RHBDF2Q6PJF5 856 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC36A4Q6YBV0 504 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 TXNRD3Q86VQ6 643 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 CLEC10AQ8IUN9 316 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 GTPBP8Q8N3Z3 284 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 CPA6Q8N4T0 437 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 GLYATL1Q969I3 302 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 DGAT2Q96PD7 388 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 TUT1Q9H6E5 874 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 IPPKQ9H8X2 491 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 ZDHHC4Q9NPG8 344 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 SERTAD4Q9NUC0 356 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 LOC100130705A0A1B0GUX0 176 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 M0R2N6 131 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 OR2B3O76000 313 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 CELF2O95319 508 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 CTNNB1P35222 781 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 HNRNPKP61978 463 aaKnown RBP eCLIP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 TMCO2Q7Z6W1 182 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 C4orf19Q8IY42 314 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC43A2Q8N370 569 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 ZNF419Q96HQ0 510 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 TMEM109Q9BVC6 243 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 PCDHGA6Q9Y5G7 932 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 A0A0G2JN53 185 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 APOA2P02652 100 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 BDKRB2P30411 391 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 ASPAP45381 313 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 PTCHD3Q3KNS1 767 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 PIGGQ5H8A4 983 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 CDKAL1Q5VV42 579 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 UNQ6126/PRO20091Q6UXV3 157 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 FAM86B1Q8N7N1 296 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 DAZAP1Q96EP5 407 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 YIPF4Q9BSR8 244 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 ZBTB26Q9HCK0 441 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 UBE2J1Q9Y385 318 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 MAGED1Q9Y5V3 778 aaPredicted RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 TMEM150CB9EJG8 249 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 SCAMP3O14828 347 aaKnown RBP12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 FLRT2O43155 660 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 TRAPPC6AO75865 159 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 H2AFB2P0C5Z0 115 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 SPOCK1Q08629 439 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 HSPBAP1Q96EW2 488 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 VPS25Q9BRG1 176 aa12.99□□□□□ -0.33
CCDC88A-204ENST00000413716 TRPM1Q7Z4N2 1603 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms