RNA–Protein interactions for RNA: ENST00000413409.6

PTPRC-206, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best) BASIC

Gene PTPRC, Length 1,338 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-206ENST00000413409 EFSO43281 561 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 RGS14O43566 566 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 EEDO75530 441 aaKnown RBP16.54■□□□□ 0.24
PTPRC-206ENST00000413409 ADRB3P13945 408 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 PCSK2P16519 638 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 DPTQ07507 201 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 NR6A1Q15406 480 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 SYTL3Q4VX76 610 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 TRIM46Q7Z4K8 759 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 TMEM126BQ8IUX1 230 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 VRK3Q8IV63 474 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 SNX31Q8N9S9 440 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 FNDC5Q8NAU1 212 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 MCOLN3Q8TDD5 553 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 USP7Q93009 1102 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 RAB7BQ96AH8 199 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 NUS1Q96E22 293 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 FAM129BQ96TA1 746 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 HDAC8Q9BY41 377 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 DYRK4Q9NR20 520 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 ADA2Q9NZK5 511 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 C6orf203Q9P0P8 240 aaPredicted RBP16.54■□□□□ 0.24
PTPRC-206ENST00000413409 PSMD13Q9UNM6 376 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 ITM2BQ9Y287 266 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 CCL27Q9Y4X3 112 aa16.54■□□□□ 0.24
PTPRC-206ENST00000413409 FXYD1O00168 92 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 MANBAO00462 879 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 MTX2O75431 263 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 PSIP1O75475 530 aaKnown RBP16.53■□□□□ 0.24
PTPRC-206ENST00000413409 SLC22A3O75751 556 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 CLDN9O95484 217 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 BAG2O95816 211 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 KRT6AP02538 564 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 KRT6BP04259 564 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 C8BP07358 591 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 ZFP36L2P47974 494 aaKnown RBP16.53■□□□□ 0.24
PTPRC-206ENST00000413409 KRT6CP48668 564 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 POM121L1PQ3SYA9 428 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 IRAK1BP1Q5VVH5 260 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 SCIMPQ6UWF3 145 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 MBOAT1Q6ZNC8 495 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 ZFAND4Q86XD8 727 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 RASGEF1AQ8N9B8 481 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 ZNF184Q99676 751 aaPredicted RBP16.53■□□□□ 0.24
PTPRC-206ENST00000413409 CCM2Q9BSQ5 444 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 ERVMER34-1Q9H9K5 563 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 THSD1Q9NS62 852 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 LEF1Q9UJU2 399 aaPredicted RBP16.53■□□□□ 0.24
PTPRC-206ENST00000413409 NBASA2RRP1 2371 aa16.53■□□□□ 0.24
PTPRC-206ENST00000413409 C15orf38-AP3S2A0A0A6YYH1 394 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 SLC5A10A0PJK1 596 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 NPIPB8E9PQR5 432 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 TSPAN6O43657 245 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 SDC3O75056 442 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 CSO75390 466 aaKnown RBP16.52■□□□□ 0.24
PTPRC-206ENST00000413409 SOD1P00441 154 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 NPPAP01160 153 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 EPORP19235 508 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 JAK1P23458 1154 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 GDF5P43026 501 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 SLC7A2P52569 658 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 NME5P56597 212 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 TRIM25Q14258 630 aaKnown RBP16.52■□□□□ 0.24
PTPRC-206ENST00000413409 ABRAXAS2Q15018 415 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 ZNF658BQ4V348 819 aaPredicted RBP16.52■□□□□ 0.24
PTPRC-206ENST00000413409 CCDC81Q6ZN84 652 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 ERN2Q76MJ5 926 aaKnown RBP16.52■□□□□ 0.24
PTPRC-206ENST00000413409 ARPINQ7Z6K5 226 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 SLC25A45Q8N413 288 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 L3MBTL4Q8NA19 623 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 BHLHE22Q8NFJ8 381 aaPredicted RBP16.52■□□□□ 0.24
PTPRC-206ENST00000413409 ATL1Q8WXF7 558 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 WRAP53Q9BUR4 548 aaKnown RBP16.52■□□□□ 0.24
PTPRC-206ENST00000413409 DNAJC11Q9NVH1 559 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 MAP10Q9P2G4 905 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 PACSIN3Q9UKS6 424 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 CNOT6Q9ULM6 557 aaKnown RBP16.52■□□□□ 0.24
PTPRC-206ENST00000413409 LRCH1Q9Y2L9 728 aa16.52■□□□□ 0.24
PTPRC-206ENST00000413409 KCNE1BA0A087WTH5 132 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 SERTM1A2A2V5 107 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 UGDHO60701 494 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 ULK1O75385 1050 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 RECQL5O94762 991 aaPredicted RBP16.51■□□□□ 0.23
PTPRC-206ENST00000413409 CATP04040 527 aaKnown RBP16.51■□□□□ 0.23
PTPRC-206ENST00000413409 HSD17B1P14061 328 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 PRPH2P23942 346 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 POLR2JP52435 117 aaKnown RBP16.51■□□□□ 0.23
PTPRC-206ENST00000413409 CTSCP53634 463 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 MS4A2Q01362 244 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 ZNF33BQ06732 778 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 TMEM115Q12893 351 aaPredicted RBP16.51■□□□□ 0.23
PTPRC-206ENST00000413409 BNIP2Q12982 314 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 PRKG2Q13237 762 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 VPS26BQ4G0F5 336 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 FAM46CQ5VWP2 391 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 ZNF776Q68DI1 518 aaPredicted RBP16.51■□□□□ 0.23
PTPRC-206ENST00000413409 USP30Q70CQ3 517 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 SLC22A15Q8IZD6 547 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 PQLC1Q8N2U9 271 aa16.51■□□□□ 0.23
PTPRC-206ENST00000413409 DPP10Q8N608 796 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms