RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 MARCKSP29966 332 aaPredicted RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 BDKRB2P30411 391 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 NSFP46459 744 aaKnown RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 TTC3P53804 2025 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 TNFRSF17Q02223 184 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 PRKAA1Q13131 559 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 KLF9Q13886 244 aaPredicted RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 ACKR1Q16570 336 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 DECR1Q16698 335 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 CFAP221Q4G0U5 840 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 C9orf50Q5SZB4 431 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 GCNT6Q5T4J0 391 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 OTUD1Q5VV17 481 aaPredicted RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 ARHGEF16Q5VV41 709 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 AGAP6Q5VW22 663 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 FRG2Q64ET8 278 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 PM20D1Q6GTS8 502 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 FAM166AQ6J272 317 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 Q6ZTK2 550 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 ZNF367Q7RTV3 350 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 LRRC70Q7Z2Q7 622 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 CTU1Q7Z7A3 348 aaKnown RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 NRROSQ86YC3 692 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 ZDHHC21Q8IVQ6 265 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 MISPQ8IVT2 679 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 THEM5Q8N1Q8 247 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 ARHGAP24Q8N264 748 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 SLC5A8Q8N695 610 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 PCDH20Q8N6Y1 951 aaKnown RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 STEAP2Q8NFT2 490 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 OR2T3Q8NH03 318 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 SSMEM1Q8WWF3 244 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 TRIB2Q92519 343 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 GIMAP5Q96F15 307 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 PSKH2Q96QS6 385 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 PCDHB18PQ96TA0 734 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 CCDC77Q9BR77 488 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 NACAP1Q9BZK3 213 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 TM6SF1Q9BZW5 370 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 SLC39A8Q9C0K1 460 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 SPRTNQ9H040 489 aaPredicted RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 VCX2Q9H322 139 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 FOXP1Q9H334 677 aaPredicted RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 SLA2Q9H6Q3 261 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 YY1AP1Q9H869 796 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 ACTR8Q9H981 624 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 CLK4Q9HAZ1 481 aaKnown RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 CRLF2Q9HC73 371 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 CNGB3Q9NQW8 809 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 GLRX2Q9NS18 164 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 POT1Q9NUX5 634 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 GTSE1Q9NYZ3 720 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 IL36RNQ9UBH0 155 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 IL20RAQ9UHF4 553 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 RUVBL2Q9Y230 463 aaKnown RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 MRPS7Q9Y2R9 242 aaKnown RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 DDX49Q9Y6V7 483 aaKnown RBP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 SPACA6W5XKT8 324 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 WDR19Q8NEZ3 1342 aa4.25□□□□□ -1.73
BRCA1-204ENST00000412061 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.25□□□□□ -1.73
BRCA1-204ENST00000412061 LY6G6EA0A0G2JKS1 128 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 A0A0U1RQJ8 604 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 RPS10-NUDT3A0A1W2PQS6 291 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 TMEM129A0AVI4 362 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 I6L893 689 aaPredicted RBP4.24□□□□□ -1.73
BRCA1-204ENST00000412061 SOCS2O14508 198 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 XPO1O14980 1071 aaKnown RBP4.24□□□□□ -1.73
BRCA1-204ENST00000412061 VPS26AO75436 327 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 ATP6AP2O75787 350 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 RHOBTB1O94844 696 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 KIAA0754O94854 1291 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 ASGR1P07306 291 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 HSPA8P11142 646 aaKnown RBP4.24□□□□□ -1.73
BRCA1-204ENST00000412061 RPA2P15927 270 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 NAGAP17050 411 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 TNFRSF1BP20333 461 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 ELAVL4P26378 380 aaKnown RBP4.24□□□□□ -1.73
BRCA1-204ENST00000412061 PTPN6P29350 595 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 HLA-FP30511 346 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 PTGER4P35408 488 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 MMP15P51511 669 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 VCPP55072 806 aaKnown RBP4.24□□□□□ -1.73
BRCA1-204ENST00000412061 HSF2Q03933 536 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 ILF2Q12905 390 aaKnown RBP4.24□□□□□ -1.73
BRCA1-204ENST00000412061 PLD1Q13393 1074 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 ETFDHQ16134 617 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 C18orf63Q68DL7 685 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 PMF1Q6P1K2 205 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 COLCA1Q6ZS62 124 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 Q6ZSV7 163 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 SHFQ7M4L6 423 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 ATG9AQ7Z3C6 839 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 DGLUCYQ7Z3D6 616 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 ADGRD2Q7Z7M1 963 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 PIM3Q86V86 326 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 CROCCP3Q8IVE0 287 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 SLC22A9Q8IVM8 553 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 STHQ8IWL8 128 aa4.24□□□□□ -1.73
BRCA1-204ENST00000412061 CENPLQ8N0S6 344 aaPredicted RBP4.24□□□□□ -1.73
BRCA1-204ENST00000412061 GBP7Q8N8V2 638 aaPredicted RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms