RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TUBG1P23258 451 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 HERV-K104P61576 105 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 SF3A2Q15428 464 aaKnown RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 GSG1LQ6UXU4 331 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 TMED4Q7Z7H5 227 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 TMEM203Q969S6 136 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 BTBD2Q9BX70 525 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 ACOT13Q9NPJ3 140 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 MST1RQ04912 1400 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 C20orf202A1L168 122 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 OR6C6A6NF89 314 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 PMM2O15305 246 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 ALDH3B1P43353 468 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 IDH3GP51553 393 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 VLDLRP98155 873 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 SLC30A6Q6NXT4 461 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 HS3ST5Q8IZT8 346 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 AGBL3Q8NEM8 1001 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 KLHL15Q96M94 604 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 PKP2Q99959 881 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 MOCS1Q9NZB8 636 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 CNTN3Q9P232 1028 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 KIF25Q9UIL4 384 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 ABT1Q9ULW3 272 aaKnown RBP12.57□□□□□ -0.4
COL6A3-206ENST00000409809 SPATA31D1Q6ZQQ2 1576 aa12.57□□□□□ -0.4
COL6A3-206ENST00000409809 A8MXE2 369 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 ALPPP05187 535 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 PTGIRP43119 386 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 TFAP2DQ7Z6R9 452 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 CHDHQ8NE62 594 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-206ENST00000409809 LGR5O75473 907 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 SLC35G4P0C7Q5 338 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 RAP2BP61225 183 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 PGBD3Q8N328 593 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 LIX1Q8N485 282 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 SLC43A3Q8NBI5 491 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 CD180Q99467 661 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 PRDM12Q9H4Q4 367 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 TCAF1Q9Y4C2 921 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 SALL3Q9BXA9 1300 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 BHMG1C9JSJ3 638 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-206ENST00000409809 HCRTR2O43614 444 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 CXCL8P10145 99 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 M6PRP20645 277 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 SERPINF1P36955 418 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 STXBP1P61764 594 aaKnown RBP12.56□□□□□ -0.4
COL6A3-206ENST00000409809 CTBP1Q13363 440 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 ZNF630Q2M218 657 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-206ENST00000409809 CLIP4Q8N3C7 705 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 DHRS1Q96LJ7 313 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 APOLD1Q96LR9 279 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 MKKSQ9NPJ1 570 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-206ENST00000409809 ATG4BQ9Y4P1 393 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 NFASCO94856 1347 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 TRAV6A0A075B6T7 132 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 TVP23AA6NH52 213 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 TREHO43280 583 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 PKMP14618 531 aaKnown RBP12.56□□□□□ -0.4
COL6A3-206ENST00000409809 RAB4AP20338 218 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 MMP12P39900 470 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 C9orf64Q5T6V5 341 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 P2RY11Q96G91 374 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 EPYCQ99645 322 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 RAB11FIP5Q9BXF6 653 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 REEP4Q9H6H4 257 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 WDR6Q9NNW5 1121 aaKnown RBP12.56□□□□□ -0.4
COL6A3-206ENST00000409809 KCNJ16Q9NPI9 418 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 ZDHHC18Q9NUE0 388 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 TMEM59LQ9UK28 342 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 MAFFQ9ULX9 164 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 MT-ND1P03886 318 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 FNTBP49356 437 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 DNAJC22Q8N4W6 341 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 MS4A15Q8N5U1 240 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 SEMA6DQ8NFY4 1073 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 GLOD4Q9HC38 313 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 C13orf42A0A1B0GVH6 325 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 ACADMP11310 421 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 RPS14P62263 151 aaKnown RBP12.56□□□□□ -0.4
COL6A3-206ENST00000409809 DUSP4Q13115 394 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 AMHR2Q16671 573 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 PCK2Q16822 640 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 TRIM46Q7Z4K8 759 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 AUTS2Q8WXX7 1259 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 ABCG8Q9H221 673 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 IPPKQ9H8X2 491 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 ERVW-1Q9UQF0 538 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 OR2AG2A6NM03 316 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 KLRC4O43908 158 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 TMEM205Q6UW68 189 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 UBE2R2Q712K3 238 aaPredicted RBP12.56□□□□□ -0.4
COL6A3-206ENST00000409809 DUSP26Q9BV47 211 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 SLC25A51Q9H1U9 297 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 MRM3Q9HC36 420 aaKnown RBP12.56□□□□□ -0.4
COL6A3-206ENST00000409809 ZDHHC7Q9NXF8 308 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 TAS2R14Q9NYV8 317 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 DIP2BQ9P265 1576 aa12.56□□□□□ -0.4
COL6A3-206ENST00000409809 GRXCR2A6NFK2 248 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 hCG_2039718K7EN88 272 aa12.55□□□□□ -0.4
COL6A3-206ENST00000409809 BMP2P12643 396 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms