RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 NANSQ9NR45 359 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 KLHL21Q9UJP4 597 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TBC1D3DA0A087WVF3 549 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TBC1D3IA0A087WXS9 549 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TBC1D3EA0A087X179 549 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TBC1D3KA0A087X1G2 549 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TBC1D3FA6NER0 549 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-203ENST00000409050 OR5K4A6NMS3 321 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 RHPN2P1A8MT19 583 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 A8MT66 165 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TBC1D3LB9A6J9 549 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 DENRO43583 198 aaKnown RBP5.94□□□□□ -1.46
SCN1A-203ENST00000409050 HTR1AP08908 422 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TBC1D3HP0C7X1 549 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 CD40LGP29965 261 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 DPP6P42658 865 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 MECP2P51608 486 aaKnown RBP5.94□□□□□ -1.46
SCN1A-203ENST00000409050 MAXP61244 160 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 GALNT2Q10471 571 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 PDGFRLQ15198 375 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TARBP2Q15633 366 aaKnown RBP5.94□□□□□ -1.46
SCN1A-203ENST00000409050 DECR1Q16698 335 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF423Q2M1K9 1284 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 NKAPLQ5M9Q1 402 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 SLC22A10Q63ZE4 541 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TBC1D3GQ6DHY5 549 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TBC1D3CQ6IPX1 549 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 REEP3Q6NUK4 255 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 SLC29A4Q7RTT9 530 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 SATL1Q86VE3 508 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TBC1D3Q8IZP1 549 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-203ENST00000409050 ARMC10Q8N2F6 343 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 OR14K1Q8NGZ2 314 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 PCDH19Q8TAB3 1148 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 CDC6Q99741 560 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TCEAL7Q9BRU2 100 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 G6PC3Q9BUM1 346 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF717Q9BY31 904 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-203ENST00000409050 RSPH9Q9H1X1 276 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-203ENST00000409050 SMOC2Q9H3U7 446 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 RPF2Q9H7B2 306 aaKnown RBP5.94□□□□□ -1.46
SCN1A-203ENST00000409050 ABCB9Q9NP78 766 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 ZCCHC3Q9NUD5 404 aaKnown RBP5.94□□□□□ -1.46
SCN1A-203ENST00000409050 TDP1Q9NUW8 608 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 UCKL1Q9NWZ5 548 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 GPRC5BQ9NZH0 403 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 FZD4Q9ULV1 537 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 N6AMT1Q9Y5N5 214 aa5.94□□□□□ -1.46
SCN1A-203ENST00000409050 CSTBP04080 98 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ETS2P15036 469 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ADH6P28332 368 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 C1QTNF8P60827 252 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 RAB5BP61020 215 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 RCAN2Q14206 197 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 NADK2Q4G0N4 442 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 FUT10Q6P4F1 479 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SCIMPQ6UWF3 145 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 NPAS3Q8IXF0 933 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ZC3H3Q8IXZ2 948 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 OR8J1Q8NGP2 316 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SETD7Q8WTS6 366 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 COPS5Q92905 334 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 TMBIM1Q969X1 311 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 PIWIL1Q96J94 861 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 RBP7Q96R05 134 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SLC35A5Q9BS91 424 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 URM1Q9BTM9 101 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 PITHD1Q9GZP4 211 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 TPK1Q9H3S4 243 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 EIF2B4Q9UI10 523 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 HCN2Q9UL51 889 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ACSL5Q9ULC5 683 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 MANBAO00462 879 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 CREG1O75629 220 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 PFKMP08237 780 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 PABPC4LP0CB38 370 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 KCNE1P15382 129 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 OR1D2P34982 312 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 GSK3BP49841 420 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 DSC2Q02487 901 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 CTC1Q2NKJ3 1217 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ZNF709Q8N972 641 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 EXOC2Q96KP1 924 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 HYLS1Q96M11 299 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SLC4A9Q96Q91 983 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SYT4Q9H2B2 425 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SUV39H2Q9H5I1 410 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 CCDC86Q9H6F5 360 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 VRTNQ9H8Y1 702 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 TBC1D17Q9HA65 648 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 ENY2Q9NPA8 101 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 EVLQ9UI08 416 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 PCDHB11Q9Y5F2 797 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 IGKV6D-41A0A0C4DH26 115 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 EDDM13A0A1B0GTR0 161 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 TRBC2A0A5B9 178 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 SLC38A8A6NNN8 435 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 C9J4A7 227 aa5.93□□□□□ -1.46
SCN1A-203ENST00000409050 CPNE3O75131 537 aaKnown RBP5.93□□□□□ -1.46
SCN1A-203ENST00000409050 RASAL1O95294 804 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms