RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 LRRC58Q96CX6 371 aa8.79□□□□□ -1
LIG4-202ENST00000405925 REXO5Q96IC2 774 aaKnown RBP8.79□□□□□ -1
LIG4-202ENST00000405925 NSMCE3Q96MG7 304 aa8.79□□□□□ -1
LIG4-202ENST00000405925 UHRF1Q96T88 793 aaPredicted RBP8.79□□□□□ -1
LIG4-202ENST00000405925 NDC1Q9BTX1 674 aa8.79□□□□□ -1
LIG4-202ENST00000405925 RSPH9Q9H1X1 276 aaPredicted RBP8.79□□□□□ -1
LIG4-202ENST00000405925 RERGLQ9H628 205 aa8.79□□□□□ -1
LIG4-202ENST00000405925 CDC14AQ9UNH5 594 aa8.79□□□□□ -1
LIG4-202ENST00000405925 DUSP12Q9UNI6 340 aa8.79□□□□□ -1
LIG4-202ENST00000405925 E7EQ34 232 aa8.79□□□□□ -1
LIG4-202ENST00000405925 H7C0S8 307 aa8.79□□□□□ -1
LIG4-202ENST00000405925 CLIC1O00299 241 aa8.79□□□□□ -1
LIG4-202ENST00000405925 PPP6CO00743 305 aa8.79□□□□□ -1
LIG4-202ENST00000405925 C8orf89P0DMQ9 161 aa8.79□□□□□ -1
LIG4-202ENST00000405925 ITGA2P17301 1181 aa8.79□□□□□ -1
LIG4-202ENST00000405925 ACSL1P33121 698 aa8.79□□□□□ -1
LIG4-202ENST00000405925 DEFB134Q4QY38 66 aa8.79□□□□□ -1
LIG4-202ENST00000405925 LETMD1Q6P1Q0 360 aa8.79□□□□□ -1
LIG4-202ENST00000405925 B4GALNT2Q8NHY0 566 aa8.79□□□□□ -1
LIG4-202ENST00000405925 WDR48Q8TAF3 677 aa8.79□□□□□ -1
LIG4-202ENST00000405925 FBXL8Q96CD0 374 aa8.79□□□□□ -1
LIG4-202ENST00000405925 CAMK1GQ96NX5 476 aa8.79□□□□□ -1
LIG4-202ENST00000405925 F2RL3Q96RI0 385 aa8.79□□□□□ -1
LIG4-202ENST00000405925 ATOH8Q96SQ7 321 aa8.79□□□□□ -1
LIG4-202ENST00000405925 SLC30A3Q99726 388 aa8.79□□□□□ -1
LIG4-202ENST00000405925 RBCK1Q9BYM8 510 aa8.79□□□□□ -1
LIG4-202ENST00000405925 PRRG3Q9BZD7 231 aa8.79□□□□□ -1
LIG4-202ENST00000405925 FOXQ1Q9C009 403 aa8.79□□□□□ -1
LIG4-202ENST00000405925 GSTO2Q9H4Y5 243 aa8.79□□□□□ -1
LIG4-202ENST00000405925 TBC1D17Q9HA65 648 aa8.79□□□□□ -1
LIG4-202ENST00000405925 SLC7A8Q9UHI5 535 aa8.79□□□□□ -1
LIG4-202ENST00000405925 ADAMTS6Q9UKP5 1117 aa8.79□□□□□ -1
LIG4-202ENST00000405925 UTS2RQ9UKP6 389 aa8.79□□□□□ -1
LIG4-202ENST00000405925 RBBP6Q7Z6E9 1792 aaKnown RBP8.79□□□□□ -1
LIG4-202ENST00000405925 NCOR1O75376 2440 aa8.78□□□□□ -1
LIG4-202ENST00000405925 A0A1W2PP18 115 aa8.78□□□□□ -1
LIG4-202ENST00000405925 FAM149AA5PLN7 773 aa8.78□□□□□ -1
LIG4-202ENST00000405925 A8MUA0 341 aa8.78□□□□□ -1
LIG4-202ENST00000405925 C5orf67F2Z3F1 127 aa8.78□□□□□ -1
LIG4-202ENST00000405925 PEX1O43933 1283 aa8.78□□□□□ -1
LIG4-202ENST00000405925 KCNJ13O60928 360 aa8.78□□□□□ -1
LIG4-202ENST00000405925 OCM2P0CE71 109 aa8.78□□□□□ -1
LIG4-202ENST00000405925 OCMP0CE72 109 aaPredicted RBP8.78□□□□□ -1
LIG4-202ENST00000405925 SRFP11831 508 aa8.78□□□□□ -1
LIG4-202ENST00000405925 CD38P28907 300 aa8.78□□□□□ -1
LIG4-202ENST00000405925 PRDX3P30048 256 aaKnown RBP8.78□□□□□ -1
LIG4-202ENST00000405925 CSTF2P33240 577 aaKnown RBP eCLIP8.78□□□□□ -1
LIG4-202ENST00000405925 RYKP34925 604 aa8.78□□□□□ -1
LIG4-202ENST00000405925 IFNGR2P38484 337 aa8.78□□□□□ -1
LIG4-202ENST00000405925 MRPS35P82673 323 aaKnown RBP8.78□□□□□ -1
LIG4-202ENST00000405925 HYAL2Q12891 473 aa8.78□□□□□ -1
LIG4-202ENST00000405925 PUS10Q3MIT2 529 aaKnown RBP8.78□□□□□ -1
LIG4-202ENST00000405925 NXPE4Q6UWF7 544 aa8.78□□□□□ -1
LIG4-202ENST00000405925 ZNF765Q7L2R6 523 aa8.78□□□□□ -1
LIG4-202ENST00000405925 PDZD3Q86UT5 571 aa8.78□□□□□ -1
LIG4-202ENST00000405925 SLC44A3Q8N4M1 653 aa8.78□□□□□ -1
LIG4-202ENST00000405925 METTL27Q8N6F8 245 aaPredicted RBP8.78□□□□□ -1
LIG4-202ENST00000405925 LMNTD1Q8N9Z9 388 aa8.78□□□□□ -1
LIG4-202ENST00000405925 HUS1BQ8NHY5 278 aa8.78□□□□□ -1
LIG4-202ENST00000405925 L3HYPDHQ96EM0 354 aa8.78□□□□□ -1
LIG4-202ENST00000405925 RNF31Q96EP0 1072 aa8.78□□□□□ -1
LIG4-202ENST00000405925 SLC47A1Q96FL8 570 aa8.78□□□□□ -1
LIG4-202ENST00000405925 ZFRQ96KR1 1074 aaKnown RBP8.78□□□□□ -1
LIG4-202ENST00000405925 LRRC3Q9BY71 257 aa8.78□□□□□ -1
LIG4-202ENST00000405925 YIPF3Q9GZM5 350 aa8.78□□□□□ -1
LIG4-202ENST00000405925 PCDHGB3Q9Y5G1 929 aa8.78□□□□□ -1
LIG4-202ENST00000405925 PRSS38A1L453 326 aa8.78□□□□□ -1
LIG4-202ENST00000405925 E7ENX8 843 aa8.78□□□□□ -1
LIG4-202ENST00000405925 OR10H3O60404 316 aa8.78□□□□□ -1
LIG4-202ENST00000405925 SNNO75324 88 aaPredicted RBP8.78□□□□□ -1
LIG4-202ENST00000405925 CCNYL3P0C7X3 344 aa8.78□□□□□ -1
LIG4-202ENST00000405925 BCKDHAP12694 445 aa8.78□□□□□ -1
LIG4-202ENST00000405925 FEN1P39748 380 aaKnown RBP8.78□□□□□ -1
LIG4-202ENST00000405925 INPP1P49441 399 aa8.78□□□□□ -1
LIG4-202ENST00000405925 ID2Q02363 134 aa8.78□□□□□ -1
LIG4-202ENST00000405925 NFATC4Q14934 902 aa8.78□□□□□ -1
LIG4-202ENST00000405925 C5orf22Q49AR2 442 aa8.78□□□□□ -1
LIG4-202ENST00000405925 NAIF1Q69YI7 327 aaPredicted RBP8.78□□□□□ -1
LIG4-202ENST00000405925 CASP12Q6UXS9 341 aa8.78□□□□□ -1
LIG4-202ENST00000405925 RASGRP3Q8IV61 690 aa8.78□□□□□ -1
LIG4-202ENST00000405925 OR2L2Q8NH16 312 aa8.78□□□□□ -1
LIG4-202ENST00000405925 ZDHHC1Q8WTX9 485 aa8.78□□□□□ -1
LIG4-202ENST00000405925 CEP19Q96LK0 163 aa8.78□□□□□ -1
LIG4-202ENST00000405925 NR1H4Q96RI1 486 aaPredicted RBP8.78□□□□□ -1
LIG4-202ENST00000405925 FNDC11Q9BVV2 318 aa8.78□□□□□ -1
LIG4-202ENST00000405925 HDAC8Q9BY41 377 aa8.78□□□□□ -1
LIG4-202ENST00000405925 MKRN2Q9H000 416 aaKnown RBP8.78□□□□□ -1
LIG4-202ENST00000405925 LRCH1Q9Y2L9 728 aa8.78□□□□□ -1
LIG4-202ENST00000405925 PTPRFP10586 1907 aa8.78□□□□□ -1
LIG4-202ENST00000405925 H3BNH8 94 aa8.78□□□□□ -1
LIG4-202ENST00000405925 CAPN5O15484 640 aaPredicted RBP8.78□□□□□ -1
LIG4-202ENST00000405925 RGS8P57771 180 aaPredicted RBP8.78□□□□□ -1
LIG4-202ENST00000405925 ABATP80404 500 aa8.78□□□□□ -1
LIG4-202ENST00000405925 CSTF1Q05048 431 aaKnown RBP8.78□□□□□ -1
LIG4-202ENST00000405925 DEFB133Q30KQ1 61 aa8.78□□□□□ -1
LIG4-202ENST00000405925 MTX3Q5HYI7 312 aa8.78□□□□□ -1
LIG4-202ENST00000405925 CATSPEREQ5SY80 951 aa8.78□□□□□ -1
LIG4-202ENST00000405925 LYSMD4Q5XG99 296 aa8.78□□□□□ -1
LIG4-202ENST00000405925 AAGABQ6PD74 315 aa8.78□□□□□ -1
LIG4-202ENST00000405925 Q7L0L9 218 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms