RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 SMURF1Q9HCE7 757 aa16.56■□□□□ 0.24
PTPRA-205ENST00000399903 DUSP12Q9UNI6 340 aa16.56■□□□□ 0.24
PTPRA-205ENST00000399903 ACTL7AQ9Y615 435 aa16.56■□□□□ 0.24
PTPRA-205ENST00000399903 NBNO60934 754 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 SP3Q02447 781 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 NFE2L1Q14494 772 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 KDM4DQ6B0I6 523 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 WDR36Q8NI36 951 aaKnown RBP16.55■□□□□ 0.24
PTPRA-205ENST00000399903 GPR62Q9BZJ7 368 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 NDRG4Q9ULP0 352 aaKnown RBP16.55■□□□□ 0.24
PTPRA-205ENST00000399903 TSPAN4O14817 238 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 CKMT1AP12532 417 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 ITGA2P17301 1181 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 RPL17P18621 184 aaKnown RBP16.55■□□□□ 0.24
PTPRA-205ENST00000399903 S100A3P33764 101 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 CXCR4P61073 352 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 HTRA3P83110 453 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 FXNQ16595 210 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 CYP27C1Q4G0S4 372 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 INO80DQ53TQ3 878 aaPredicted RBP16.55■□□□□ 0.24
PTPRA-205ENST00000399903 PYDC2Q56P42 97 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 TMEM173Q86WV6 379 aaPredicted RBP16.55■□□□□ 0.24
PTPRA-205ENST00000399903 PAF1Q8N7H5 531 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 SPPL2AQ8TCT8 520 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 PKMYT1Q99640 499 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 CRISPLD1Q9H336 500 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 SPASTQ9UBP0 616 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 HS3ST4Q9Y661 456 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 E9PAM4 449 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 ARNTLO00327 626 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 GFRA2O00451 464 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 OR2B3O76000 313 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 TIE1P35590 1138 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 CDKN2CP42773 168 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 MAPK12P53778 367 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 IL2P60568 153 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 ZNF267Q14586 743 aaPredicted RBP16.55■□□□□ 0.24
PTPRA-205ENST00000399903 PTPRRQ15256 657 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 ALFQ53S48 1182 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 ZNF621Q6ZSS3 439 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 TIGD4Q8IY51 512 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 SLC43A3Q8NBI5 491 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 RAET1EQ8TD07 263 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 PDLIM5Q96HC4 596 aaKnown RBP16.55■□□□□ 0.24
PTPRA-205ENST00000399903 SUSD3Q96L08 255 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 CCDC115Q96NT0 180 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 ASPNQ9BXN1 380 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 HDHD5Q9BXW7 423 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 SNX7Q9UNH6 387 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 GRIP1Q9Y3R0 1128 aa16.55■□□□□ 0.24
PTPRA-205ENST00000399903 I3L521 148 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 E2F3O00716 465 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 ZNF780AO75290 641 aaPredicted RBP16.54■□□□□ 0.24
PTPRA-205ENST00000399903 SH3BGRLO75368 114 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 VPS26AO75436 327 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 FPR1P21462 350 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 STC1P52823 247 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 SLC14A1Q13336 389 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 CPSF6Q16630 551 aaKnown RBP eCLIP16.54■□□□□ 0.24
PTPRA-205ENST00000399903 PARP15Q460N3 678 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 CDONQ4KMG0 1287 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 ZC3H12BQ5HYM0 836 aaKnown RBP16.54■□□□□ 0.24
PTPRA-205ENST00000399903 RNF180Q86T96 592 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 ZNF598Q86UK7 904 aaKnown RBP16.54■□□□□ 0.24
PTPRA-205ENST00000399903 CHPFQ8IZ52 775 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 IMP4Q96G21 291 aaKnown RBP16.54■□□□□ 0.24
PTPRA-205ENST00000399903 HSH2DQ96JZ2 352 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 FRMD6Q96NE9 622 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 DERL2Q9GZP9 239 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 KCNN3Q9UGI6 736 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 TMPRSS11EQ9UL52 423 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 UNC80Q8N2C7 3258 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 M0QZQ0 153 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 RPP40O75818 363 aaKnown RBP16.54■□□□□ 0.24
PTPRA-205ENST00000399903 SOX3P41225 446 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 QPRTQ15274 297 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 TRIM71Q2Q1W2 868 aaKnown RBP16.54■□□□□ 0.24
PTPRA-205ENST00000399903 CTXN3Q4LDR2 81 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 NADSYN1Q6IA69 706 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 GOLGA7Q7Z5G4 137 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 SNX20Q7Z614 316 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 DBF4BQ8NFT6 615 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 FCGR1BQ92637 280 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 TMEM203Q969S6 136 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 NSUN3Q9H649 340 aaKnown RBP16.54■□□□□ 0.24
PTPRA-205ENST00000399903 CFL2Q9Y281 166 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 NEUROG3Q9Y4Z2 214 aa16.54■□□□□ 0.24
PTPRA-205ENST00000399903 LCHNA4D1U4 455 aa16.53■□□□□ 0.24
PTPRA-205ENST00000399903 WWP2O00308 870 aa16.53■□□□□ 0.24
PTPRA-205ENST00000399903 WISP3O95389 354 aaPredicted RBP16.53■□□□□ 0.24
PTPRA-205ENST00000399903 CYP2A6P11509 494 aaPredicted RBP16.53■□□□□ 0.24
PTPRA-205ENST00000399903 ATN1P54259 1190 aaPredicted RBP16.53■□□□□ 0.24
PTPRA-205ENST00000399903 ZXDBP98169 803 aa16.53■□□□□ 0.24
PTPRA-205ENST00000399903 CYP4F8P98187 520 aa16.53■□□□□ 0.24
PTPRA-205ENST00000399903 SCN1BQ07699 218 aa16.53■□□□□ 0.24
PTPRA-205ENST00000399903 GTF2H2Q13888 395 aa16.53■□□□□ 0.24
PTPRA-205ENST00000399903 EFR3AQ14156 821 aa16.53■□□□□ 0.24
PTPRA-205ENST00000399903 PIK3R6Q5UE93 754 aa16.53■□□□□ 0.24
PTPRA-205ENST00000399903 FAM205BPQ63HN1 556 aa16.53■□□□□ 0.24
PTPRA-205ENST00000399903 GTF2H2CQ6P1K8 395 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms