RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PACSIN3Q9UKS6 424 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 PLEKHM1Q9Y4G2 1056 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 PLXND1Q9Y4D7 1925 aa17.55■□□□□ 0.4
CCDC88C-203ENST00000389856 C15orf38-AP3S2A0A0A6YYH1 394 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 A0A1W2PP18 115 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 PRORSD1PA6NEY8 169 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 OR5K4A6NMS3 321 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 MAP3K13O43283 966 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 PRPS2P11908 318 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 SHMT2P34897 504 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 RPL6Q02878 288 aaKnown RBP17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 FOLH1Q04609 750 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 CLCA4Q14CN2 919 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 LRRC36Q1X8D7 754 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 IL23RQ5VWK5 629 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 ARPINQ7Z6K5 226 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 PARGQ86W56 976 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 TMEM102Q8N9M5 508 aaPredicted RBP17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 MFSD2AQ8NA29 543 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 GLB1L3Q8NCI6 653 aaPredicted RBP17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 C1orf50Q9BV19 199 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 ACPTQ9BZG2 426 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 PLAGL1Q9UM63 463 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 TSC22D4Q9Y3Q8 395 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 PCDHB11Q9Y5F2 797 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 FAM234BA2RU67 622 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 F3P13726 295 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 CTSEP14091 401 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 PKLRP30613 574 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 SLC7A2P52569 658 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 CHN2P52757 468 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 DIO3P55073 304 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 RCAN2Q14206 197 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 SLBPQ14493 270 aaKnown RBP eCLIP17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 PDK3Q15120 406 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 SUSD1Q6UWL2 747 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 RNF148Q8N7C7 305 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 OR9I1Q8NGQ6 314 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 WDR20Q8TBZ3 569 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 MTFMTQ96DP5 389 aaKnown RBP17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 IL17FQ96PD4 163 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 HBEGFQ99075 208 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 AIF1LQ9BQI0 150 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 COPS7BQ9H9Q2 264 aaPredicted RBP17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 FARSBQ9NSD9 589 aaKnown RBP17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 ARMC1Q9NVT9 282 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 VPS29Q9UBQ0 182 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 MUTYHQ9UIF7 546 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 MAPRE3Q9UPY8 281 aa17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 POLR3HQ9Y535 204 aaPredicted RBP17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 SPTBN5Q9NRC6 3674 aaKnown RBP17.54■□□□□ 0.4
CCDC88C-203ENST00000389856 LRP4O75096 1905 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 FOXE1O00358 373 aaPredicted RBP17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 EEDO75530 441 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 UBTFL6P0CB48 400 aaPredicted RBP17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 PCNAP12004 261 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 JAK1P23458 1154 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 CD38P28907 300 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 CCR8P51685 355 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 RACK1P63244 317 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 ABATP80404 500 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 HMGCS1Q01581 520 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 TPRG1LQ5T0D9 272 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 DUS1LQ6P1R4 473 aaKnown RBP17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 SLC30A9Q6PML9 568 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 CYP20A1Q6UW02 462 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 TRIM48Q8IWZ4 208 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 LAS2Q8IYD9 372 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 TBC1D19Q8N5T2 526 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 AVL9Q8NBF6 648 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 OR7G3Q8NG95 312 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 GPBAR1Q8TDU6 330 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 GBP5Q96PP8 586 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 PKP2Q99959 881 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 TMEM168Q9H0V1 697 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 SLC52A3Q9NQ40 469 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 C8orf4Q9NR00 106 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 NDUFA13Q9P0J0 144 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 MAP10Q9P2G4 905 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 TBC1D29Q9UFV1 150 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 TAC3Q9UHF0 121 aa17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 LEF1Q9UJU2 399 aaPredicted RBP17.53■□□□□ 0.4
CCDC88C-203ENST00000389856 PIPSLA2A3N6 862 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 OR52A4PA6NMU1 304 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 PRAMEF4O60810 478 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 DNAJA2O60884 412 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 CAPN3P20807 821 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 HRH2P25021 359 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 VARSP26640 1264 aaKnown RBP17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 PIK3CBP42338 1070 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 POLR2JP52435 117 aaKnown RBP17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 ZXDAP98168 799 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 RFTN2Q52LD8 501 aaPredicted RBP17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 SPIN4Q56A73 249 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 C6orf10Q5SRN2 563 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 PRAMEF9Q5VWM5 478 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 LCN8Q6JVE9 175 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 RETREG3Q86VR2 466 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 LILRA2Q8N149 483 aa17.52■□□□□ 0.4
CCDC88C-203ENST00000389856 SLC22A18ASQ8N1D0 253 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms