RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 ASB1Q9Y576 335 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 SEC16AO15027 2179 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 ATMQ13315 3056 aa12.77□□□□□ -0.37
VPS28-202ENST00000377348 IGSF10Q6WRI0 2623 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 HYKKA2RU49 373 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 FITM1A5D6W6 292 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 RFPL1O75677 317 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 PRKAR1AP10644 381 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 ITGAXP20702 1163 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 HRH2P25021 359 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 VARSP26640 1264 aaKnown RBP12.76□□□□□ -0.37
VPS28-202ENST00000377348 HSD17B3P37058 310 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 SLCO1A2P46721 670 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 AGTR2P50052 363 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 CCR8P51685 355 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 FOXL2P58012 376 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 SNRPNP63162 240 aaKnown RBP12.76□□□□□ -0.37
VPS28-202ENST00000377348 ACAP2Q15057 778 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 ATP1A1-AS1Q5TC04 95 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 SULT1C3Q6IMI6 304 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 WDR93Q6P2C0 686 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 C16orf46Q6P387 395 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 VN1R4Q7Z5H5 301 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 CCDC91Q7Z6B0 441 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 TMPRSS11BQ86T26 416 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 KLHDC8AQ8IYD2 350 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 CSNK1A1LQ8N752 337 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 ENDOVQ8N8Q3 282 aaKnown RBP12.76□□□□□ -0.37
VPS28-202ENST00000377348 ZNF740Q8NDX6 193 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 ABHD11Q8NFV4 315 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 AENQ8WTP8 325 aaKnown RBP12.76□□□□□ -0.37
VPS28-202ENST00000377348 SNRNP27Q8WVK2 155 aaKnown RBP12.76□□□□□ -0.37
VPS28-202ENST00000377348 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.76□□□□□ -0.37
VPS28-202ENST00000377348 RERGQ96A58 199 aaPredicted RBP12.76□□□□□ -0.37
VPS28-202ENST00000377348 C10orf90Q96M02 699 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 ENAMQ9NRM1 1142 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 NUDT4Q9NZJ9 180 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 PSMC3IPQ9P2W1 217 aaPredicted RBP12.76□□□□□ -0.37
VPS28-202ENST00000377348 TBK1Q9UHD2 729 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 PTBP2Q9UKA9 531 aaKnown RBP12.76□□□□□ -0.37
VPS28-202ENST00000377348 FER1L5A0AVI2 2057 aa12.76□□□□□ -0.37
VPS28-202ENST00000377348 SMG1Q96Q15 3661 aaKnown RBP12.75□□□□□ -0.37
VPS28-202ENST00000377348 A0A1B0GX78 115 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 SMIM23A6NLE4 172 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 FOXO6A8MYZ6 492 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 C21orf140B9A014 251 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 DSCR3O14972 297 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 CCNT2O60583 730 aaKnown RBP12.75□□□□□ -0.37
VPS28-202ENST00000377348 STK16O75716 305 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 S100BP04271 92 aaPredicted RBP12.75□□□□□ -0.37
VPS28-202ENST00000377348 MTHFD2P13995 350 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 AGXTP21549 392 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 GGT5P36269 586 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 ARSFP54793 590 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 RPS15AP62244 130 aaKnown RBP12.75□□□□□ -0.37
VPS28-202ENST00000377348 DCDP81605 110 aaKnown RBP12.75□□□□□ -0.37
VPS28-202ENST00000377348 RELAQ04206 551 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 PRTGQ2VWP7 1150 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 TECRLQ5HYJ1 363 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 CDKL4Q5MAI5 379 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 LGSNQ5TDP6 509 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 MLIPQ5VWP3 458 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 NXPE4Q6UWF7 544 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 TMEM151BQ8IW70 566 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 TCAIMQ8N3R3 496 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 ZSCAN1Q8NBB4 408 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 OR4K1Q8NGD4 311 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 OR2W6PQ8NHA6 318 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 RHEBL1Q8TAI7 183 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 PROKR1Q8TCW9 393 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 MZB1Q8WU39 189 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 CABS1Q96KC9 395 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 SCYL1Q96KG9 808 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 CCDC77Q9BR77 488 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 EFHD1Q9BUP0 239 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 PARD6BQ9BYG5 372 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 ACTL8Q9H568 366 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 SLC22A11Q9NSA0 550 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 FETUBQ9UGM5 382 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 KCND3Q9UK17 655 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 FARSAQ9Y285 508 aaKnown RBP12.75□□□□□ -0.37
VPS28-202ENST00000377348 MRPS2Q9Y399 296 aaKnown RBP12.75□□□□□ -0.37
VPS28-202ENST00000377348 PCDHGA6Q9Y5G7 932 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 KCNE2Q9Y6J6 123 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 MAU2Q9Y6X3 613 aa12.75□□□□□ -0.37
VPS28-202ENST00000377348 CACNA1GO43497 2377 aa12.74□□□□□ -0.37
VPS28-202ENST00000377348 MDC1Q14676 2089 aaKnown RBP12.74□□□□□ -0.37
VPS28-202ENST00000377348 IQANK1A0A1B0GTG1 560 aa12.74□□□□□ -0.37
VPS28-202ENST00000377348 ZNF891A8MT65 544 aaPredicted RBP12.74□□□□□ -0.37
VPS28-202ENST00000377348 GOLGA8RI6L899 631 aa12.74□□□□□ -0.37
VPS28-202ENST00000377348 MAP2K7O14733 419 aa12.74□□□□□ -0.37
VPS28-202ENST00000377348 OR1F1O43749 312 aa12.74□□□□□ -0.37
VPS28-202ENST00000377348 PRAMEF4O60810 478 aa12.74□□□□□ -0.37
VPS28-202ENST00000377348 CNOT3O75175 753 aaKnown RBP12.74□□□□□ -0.37
VPS28-202ENST00000377348 FURINP09958 794 aa12.74□□□□□ -0.37
VPS28-202ENST00000377348 PTPN4P29074 926 aa12.74□□□□□ -0.37
VPS28-202ENST00000377348 GRK3P35626 688 aa12.74□□□□□ -0.37
VPS28-202ENST00000377348 OR1D4P47884 311 aa12.74□□□□□ -0.37
VPS28-202ENST00000377348 RPS15P62841 145 aaKnown RBP12.74□□□□□ -0.37
VPS28-202ENST00000377348 REEP5Q00765 189 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms