RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 OAS2P29728 719 aaKnown RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ATP5DP30049 168 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 TCF7P36402 384 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 HSD17B3P37058 310 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 MAGEA11P43364 429 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 RGS7P49802 495 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 GMPSP49915 693 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 MTCP1P56278 107 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 COX10Q12887 443 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 TNK1Q13470 666 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 NECTIN1Q15223 517 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 UGCGQ16739 394 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ODF4Q2M2E3 257 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 CTU2Q2VPK5 515 aaKnown RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 FASTKD1Q53R41 847 aaKnown RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF774Q6NX45 483 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 FAAP20Q6NZ36 180 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 PAQR6Q6TCH4 344 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 METTL7BQ6UX53 244 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 MSANTD1Q6ZTZ1 278 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 SH2D6Q7Z4S9 175 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 NRARPQ7Z6K4 114 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 NUDT13Q86X67 352 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 SNX32Q86XE0 403 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 DZIP1Q86YF9 867 aaKnown RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 MMD2Q8IY49 270 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 CCDC170Q8IYT3 715 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 LGI2Q8N0V4 545 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 RAB42Q8N4Z0 105 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 NHLRC2Q8NBF2 726 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 C9orf43Q8TAL5 461 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ZNRF4Q8WWF5 429 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 SUSD6Q92537 303 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 RAD54LQ92698 747 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 BSCL2Q96G97 398 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ERO1AQ96HE7 468 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 PARK7Q99497 189 aaKnown RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 CCDC3Q9BQI4 270 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 PIGQQ9BRB3 760 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 MIS12Q9H081 205 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 MINDY3Q9H8M7 445 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 EPHA6Q9UF33 1036 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ANKRD61A6NGH8 418 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 C5orf52A6NGY3 159 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 CASTOR2A6NHX0 329 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 IFIT3O14879 490 aaKnown RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ST8SIA3O43173 380 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 PRAF2O60831 178 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 RPS6KA5O75582 802 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ATP6AP2O75787 350 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 LUC7L3O95232 432 aaKnown RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 EFNA1P20827 205 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 CD27P26842 260 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 PSMB4P28070 264 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 OPRL1P41146 370 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 RASGEF1BQ0VAM2 473 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 TAF10Q12962 218 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 SQLEQ14534 574 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 SLMAPQ14BN4 828 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 NONOQ15233 471 aaKnown RBP eCLIP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 NPTX1Q15818 432 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 TAZQ16635 292 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 MEP1BQ16820 701 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 SLC25A53Q5H9E4 307 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ZNF343Q6P1L6 599 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 PSRC1Q6PGN9 363 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 C11orf88Q6PI97 169 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 GBP6Q6ZN66 633 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 GPRIN3Q6ZVF9 776 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 CCDC91Q7Z6B0 441 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 HOOK3Q86VS8 718 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 APCDD1Q8J025 514 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 NUP93Q8N1F7 819 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 TMCO5AQ8N6Q1 288 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 AMER3Q8N944 861 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 GOLGA6L2Q8N9W4 650 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 UXS1Q8NBZ7 420 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 DNASE1L2Q92874 299 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 AZIN2Q96A70 460 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 C2orf40Q9H1Z8 148 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 MMADHCQ9H3L0 296 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 Q9H8V8 135 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 LMAN1LQ9HAT1 526 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 RAB9BQ9NP90 201 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 SDR39U1Q9NRG7 319 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 CWC25Q9NXE8 425 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ZDHHC2Q9UIJ5 367 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 KLK13Q9UKR3 277 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 ITGA11Q9UKX5 1188 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 HEG1Q9ULI3 1381 aa1.87□□□□□ -2.11
VPS13A-206ENST00000376646 COL5A2P05997 1499 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-206ENST00000376646 MYH15Q9Y2K3 1946 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 IGKV6D-41A0A0C4DH26 115 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 MSGN1A6NI15 193 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 ARPC2O15144 300 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 PPIP5K2O43314 1243 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 SELENOFO60613 162 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 FCGR3BO75015 233 aa1.86□□□□□ -2.11
VPS13A-206ENST00000376646 SRSF10O75494 262 aaKnown RBP1.86□□□□□ -2.11
VPS13A-206ENST00000376646 PRKRAO75569 313 aaKnown RBP1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms