RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 PDPRQ8NCN5 879 aa13.83□□□□□ -0.2
HMGA1-203ENST00000374116 TRUB1Q8WWH5 349 aaKnown RBP13.83□□□□□ -0.2
HMGA1-203ENST00000374116 STARD8Q92502 1023 aa13.83□□□□□ -0.2
HMGA1-203ENST00000374116 ATP6V1E2Q96A05 226 aa13.83□□□□□ -0.2
HMGA1-203ENST00000374116 PNMA8BQ9ULN7 279 aaPredicted RBP13.83□□□□□ -0.2
HMGA1-203ENST00000374116 ST14Q9Y5Y6 855 aa13.83□□□□□ -0.2
HMGA1-203ENST00000374116 SPEGQ15772 3267 aa13.83□□□□□ -0.2
HMGA1-203ENST00000374116 IGLV3-16A0A075B6K0 115 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 A0A1B0GTW7 788 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 ZBTB11O95625 1053 aaPredicted RBP13.82□□□□□ -0.2
HMGA1-203ENST00000374116 HSD17B1P14061 328 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 GNSP15586 552 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 RXRGP48443 463 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 AFF3P51826 1226 aaKnown RBP13.82□□□□□ -0.2
HMGA1-203ENST00000374116 DIO3P55073 304 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 ERVPABLB-1P60509 514 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 BNIP2Q12982 314 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 HENMT1Q5T8I9 393 aaKnown RBP13.82□□□□□ -0.2
HMGA1-203ENST00000374116 DOK6Q6PKX4 331 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 HEATR4Q86WZ0 1026 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 TNIP2Q8NFZ5 429 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 ESAMQ96AP7 390 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 LRRC58Q96CX6 371 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 PSD2Q9BQI7 771 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 SLC39A3Q9BRY0 314 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 C1QTNF7Q9BXJ2 289 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 TRIM15Q9C019 465 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 NOL11Q9H8H0 719 aaKnown RBP13.82□□□□□ -0.2
HMGA1-203ENST00000374116 RXFP3Q9NSD7 469 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 ZIM2Q9NZV7 527 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 KLHL42Q9P2K6 505 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 NCDNQ9UBB6 729 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 CRLS1Q9UJA2 301 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 TMPRSS11EQ9UL52 423 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 OARD1Q9Y530 152 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 ASB1Q9Y576 335 aa13.82□□□□□ -0.2
HMGA1-203ENST00000374116 HEMK1Q9Y5R4 338 aaPredicted RBP13.82□□□□□ -0.2
HMGA1-203ENST00000374116 C7orf72A4D263 438 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 NME4O00746 187 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 FFAR2O15552 330 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 SLC22A3O75751 556 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 SLC25A14O95258 325 aaPredicted RBP13.81□□□□□ -0.2
HMGA1-203ENST00000374116 GTF2H2Q13888 395 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 RCAN2Q14206 197 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 AGERQ15109 404 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 ATP13A5Q4VNC0 1218 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 ZDHHC20Q5W0Z9 365 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 NANOGP8Q6NSW7 305 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 GTF2H2CQ6P1K8 395 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 GOLGA7Q7Z5G4 137 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 CLVS1Q8IUQ0 354 aaPredicted RBP13.81□□□□□ -0.2
HMGA1-203ENST00000374116 ZBTB2Q8N680 514 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 CLDN19Q8N6F1 224 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 CDYL2Q8N8U2 506 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 GOLM1Q8NBJ4 401 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 OR2T11Q8NH01 316 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 KLHDC7BQ96G42 594 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 APOOQ9BUR5 198 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 TRIM54Q9BYV2 358 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 PAIP1Q9H074 479 aaKnown RBP13.81□□□□□ -0.2
HMGA1-203ENST00000374116 RPF2Q9H7B2 306 aaKnown RBP13.81□□□□□ -0.2
HMGA1-203ENST00000374116 PARD6AQ9NPB6 346 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 ATAD3AQ9NVI7 634 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 GMEB2Q9UKD1 530 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 SNX11Q9Y5W9 270 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 HS3ST3A1Q9Y663 406 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 CACNA1EQ15878 2313 aa13.81□□□□□ -0.2
HMGA1-203ENST00000374116 DYTNA2CJ06 578 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 TMEM202A6NGA9 273 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 AQP12BA6NM10 295 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 FXYD1O00168 92 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 TLR4O00206 839 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 EEDO75530 441 aaKnown RBP13.8□□□□□ -0.2
HMGA1-203ENST00000374116 OTCP00480 354 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 RETP07949 1114 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 PFN3P60673 137 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 B4GALNT1Q00973 533 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 CTBSQ01459 385 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 NDUFA5Q16718 116 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 DUOXA1Q1HG43 343 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 ATP6AP1LQ52LC2 224 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 C6orf136Q5SQH8 315 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 PEAR1Q5VY43 1037 aaPredicted RBP13.8□□□□□ -0.2
HMGA1-203ENST00000374116 LETMD1Q6P1Q0 360 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 METTL2BQ6P1Q9 378 aaKnown RBP13.8□□□□□ -0.2
HMGA1-203ENST00000374116 ABI3BPQ7Z7G0 1075 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 AQP12AQ8IXF9 295 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 MINDY2Q8NBR6 621 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 OR52B6Q8NGF0 335 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 METTL6Q8TCB7 284 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 ASB12Q8WXK4 309 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 SLCO4A1Q96BD0 722 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 MUC13Q9H3R2 512 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 WDR26Q9H7D7 661 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 IL1RL2Q9HB29 575 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 IL21RQ9HBE5 538 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 ZDHHC3Q9NYG2 299 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 CNOT6Q9ULM6 557 aaKnown RBP13.8□□□□□ -0.2
HMGA1-203ENST00000374116 ERGIC3Q9Y282 383 aa13.8□□□□□ -0.2
HMGA1-203ENST00000374116 RIF1Q5UIP0 2472 aaKnown RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms