RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ATG10Q9H0Y0 220 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 TRPC4Q9UBN4 977 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 SHANK1Q9Y566 2161 aa20.63■□□□□ 0.89
CCDC28B-201ENST00000373602 ANXA5P08758 320 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 HIST1H2AGP0C0S8 130 aaPredicted RBP20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 ACPPP15309 386 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 HIST1H2ADP20671 130 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 GNLYP22749 145 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 CCND1P24385 295 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 RPS15AP62244 130 aaKnown RBP20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 CSNK1G2P78368 415 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 NAE1Q13564 534 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 NDUFA9Q16795 377 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 FAM45BPQ6NSW5 357 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 LCTLQ6UWM7 567 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 Q6ZS92 163 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 VN1R4Q7Z5H5 301 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 PARP9Q8IXQ6 854 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 ZADH2Q8N4Q0 377 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 FAM45AQ8TCE6 357 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 THAP11Q96EK4 314 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 HIST1H2AHQ96KK5 128 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 OLFM1Q99784 485 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 HIST1H2AJQ99878 128 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 H2AFJQ9BTM1 129 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 SGPP1Q9BX95 441 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 TGIF2Q9GZN2 237 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 LHPPQ9H008 270 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 MKKSQ9NPJ1 570 aaPredicted RBP20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 C14orf105Q9NVL8 296 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 SH2B3Q9UQQ2 575 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 DOCK10Q96BY6 2186 aa20.62■□□□□ 0.89
CCDC28B-201ENST00000373602 DOPEY2Q9Y3R5 2298 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 A0A0A6YYC8 382 aaPredicted RBP20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 EFCAB8A8MWE9 144 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 IDSB3KWA1 339 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 E7ESA3 106 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 I3L1I5 382 aaPredicted RBP20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 MAP2K7O14733 419 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 FFAR3O14843 346 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 GPR42O15529 346 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 HPP00738 406 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 PGGT1BP53609 377 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 EMP2P54851 167 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 Q0VFX4 171 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 ZXDCQ2QGD7 858 aaPredicted RBP20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 IRAK1BP1Q5VVH5 260 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 IGFL2Q6UWQ7 119 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 C17orf64Q86WR6 236 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 ANKMY2Q8IV38 441 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 IQCKQ8N0W5 287 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 KRT12Q99456 494 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 YIPF2Q9BWQ6 316 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 RELNP78509 3460 aa20.61■□□□□ 0.89
CCDC28B-201ENST00000373602 HECTD1Q9ULT8 2610 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 A0A1W2PQ72 361 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 NPPBP16860 134 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 RPL21P46778 160 aaKnown RBP20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 AP1S2P56377 157 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 SNRPNP63162 240 aaKnown RBP20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 MGAT5Q09328 741 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 PDIA2Q13087 525 aaKnown RBP20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 CBLBQ13191 982 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 AGAP7PQ5VUJ5 663 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 DUPD1Q68J44 220 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 CAPN13Q6MZZ7 669 aaPredicted RBP20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 ALKBH8Q96BT7 664 aaKnown RBP20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 C8orf44Q96CB5 159 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 PDLIM5Q96HC4 596 aaKnown RBP20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 AGAP4Q96P64 663 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 ILKAPQ9H0C8 392 aaPredicted RBP20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 ARL15Q9NXU5 204 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 MOCS1Q9NZB8 636 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 SNX24Q9Y343 169 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 MRPS2Q9Y399 296 aaKnown RBP20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 FLNCQ14315 2725 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 PTPN13Q12923 2485 aa20.6■□□□□ 0.89
CCDC28B-201ENST00000373602 NDC80O14777 642 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 STATHP02808 62 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 COX6A1P12074 109 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 AVPR1BP47901 424 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 FASTKD3Q14CZ7 662 aaKnown RBP20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 SYT16Q17RD7 645 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 CRB2Q5IJ48 1285 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 NDUFAF7Q7L592 441 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 ZC3H7AQ8IWR0 971 aaKnown RBP20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 FBXO36Q8NEA4 188 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 OR56A3Q8NH54 315 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 SNRNP40Q96DI7 357 aaKnown RBP20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 TM4SF19Q96DZ7 209 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 C19orf60Q96EN9 201 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 THOC3Q96J01 351 aaKnown RBP20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 WDR77Q9BQA1 342 aaPredicted RBP20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 TRIM54Q9BYV2 358 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 ZNF160Q9HCG1 818 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 ZFATQ9P243 1243 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 PSAT1Q9Y617 370 aa20.59■□□□□ 0.89
CCDC28B-201ENST00000373602 FEZF1A0PJY2 475 aa20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 PABPN1LA6NDY0 278 aaKnown RBP20.58■□□□□ 0.89
CCDC28B-201ENST00000373602 TCP11X1B4DZS4 312 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms