RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ACOX1Q15067 660 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 TCTN1Q2MV58 587 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 FAM26DQ5JW98 314 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 LRIF1Q5T3J3 769 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 TRAF7Q6Q0C0 670 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 CMTM8Q8IZV2 173 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 Q8N9G6 341 aaPredicted RBP11.74□□□□□ -0.53
CLIP3-201ENST00000360535 FAM83FQ8NEG4 500 aaPredicted RBP11.74□□□□□ -0.53
CLIP3-201ENST00000360535 DYNC2LI1Q8TCX1 351 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 GTPBP3Q969Y2 492 aaKnown RBP11.74□□□□□ -0.53
CLIP3-201ENST00000360535 FEVQ99581 238 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 TTLL2Q9BWV7 592 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 DUSP21Q9H596 190 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 DNAJC11Q9NVH1 559 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 RLIMQ9NVW2 624 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 POU2F3Q9UKI9 436 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 ACSL6Q9UKU0 697 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 OGDHLQ9ULD0 1010 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 ABT1Q9ULW3 272 aaKnown RBP11.74□□□□□ -0.53
CLIP3-201ENST00000360535 SUV39H1O43463 412 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 IGSF6O95976 241 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 STSP08842 583 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 RPS3P23396 243 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLIP3-201ENST00000360535 MAPK1P28482 360 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 PREPP48147 710 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 CRISP3P54108 245 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 LMAN2Q12907 356 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 GANABQ14697 944 aaKnown RBP11.74□□□□□ -0.53
CLIP3-201ENST00000360535 UAP1L1Q3KQV9 507 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 CCSMST1Q4G0I0 132 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 MACC1Q6ZN28 852 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 PLEKHG7Q6ZR37 379 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 BBS7Q8IWZ6 715 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 ENTHD1Q8IYW4 607 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 NAGSQ8N159 534 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 MFSD4AQ8N468 514 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 C1orf52Q8N6N3 182 aaKnown RBP11.74□□□□□ -0.53
CLIP3-201ENST00000360535 YIPF6Q96EC8 236 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 CMTM7Q96FZ5 175 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 ZNF300Q96RE9 604 aaPredicted RBP11.74□□□□□ -0.53
CLIP3-201ENST00000360535 CLSTN3Q9BQT9 956 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 TMEM45AQ9NWC5 275 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 B3GNT3Q9Y2A9 372 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 TMEM202A6NGA9 273 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 E7EQ34 232 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 WBP4O75554 376 aaKnown RBP11.73□□□□□ -0.53
CLIP3-201ENST00000360535 ITGAMP11215 1152 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 WEE1P30291 646 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 RAB15P59190 212 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 ELAVL2Q12926 359 aaKnown RBP11.73□□□□□ -0.53
CLIP3-201ENST00000360535 TIGD6Q17RP2 521 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 PTOV1Q86YD1 416 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 CACTIN-AS1Q8N1I8 211 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 STX19Q8N4C7 294 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 Q96MT0 163 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 SLC29A3Q9BZD2 475 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 OR51E2Q9H255 320 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 ZDHHC3Q9NYG2 299 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 ATP11BQ9Y2G3 1177 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 MGAT4DA6NG13 374 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 TNFRSF11BO00300 401 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 ANXA4P09525 319 aaPredicted RBP11.73□□□□□ -0.53
CLIP3-201ENST00000360535 LHCGRP22888 699 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 RCVRNP35243 200 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 SPIBQ01892 262 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 C2orf73Q8N5S3 287 aaPredicted RBP11.73□□□□□ -0.53
CLIP3-201ENST00000360535 DUSP26Q9BV47 211 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 EXOSC4Q9NPD3 245 aaKnown RBP11.73□□□□□ -0.53
CLIP3-201ENST00000360535 NECTIN3Q9NQS3 549 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 ABCB8Q9NUT2 735 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 CFAP97Q9P2B7 532 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 RNF6Q9Y252 685 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 TTC34A8MYJ7 566 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 J3KTA2 159 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 INPPL1O15357 1258 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 PCDH7O60245 1069 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 CYP7B1O75881 506 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 CD40LGP29965 261 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 ATN1P54259 1190 aaPredicted RBP11.73□□□□□ -0.53
CLIP3-201ENST00000360535 PTSQ03393 145 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 IL18R1Q13478 541 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 ZNF852Q6ZMS4 543 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 SLC5A8Q8N695 610 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 BRD9Q9H8M2 597 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 SGK2Q9HBY8 427 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 WDR70Q9NW82 654 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 DNMT3BQ9UBC3 853 aaKnown RBP11.73□□□□□ -0.53
CLIP3-201ENST00000360535 VPS29Q9UBQ0 182 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 SLC6A14Q9UN76 642 aa11.73□□□□□ -0.53
CLIP3-201ENST00000360535 ETHE1O95571 254 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 ETFAP13804 333 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 CD22P20273 847 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 PRPS1L1P21108 318 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 SLC19A1P41440 591 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 MEF2AQ02078 507 aaPredicted RBP11.72□□□□□ -0.53
CLIP3-201ENST00000360535 MTA1Q13330 715 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 SYT6Q5T7P8 510 aaPredicted RBP11.72□□□□□ -0.53
CLIP3-201ENST00000360535 CPTPQ5TA50 214 aa11.72□□□□□ -0.53
CLIP3-201ENST00000360535 CAPN13Q6MZZ7 669 aaPredicted RBP11.72□□□□□ -0.53
CLIP3-201ENST00000360535 CCDC103Q8IW40 242 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms