RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 FAM189BP81408 668 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 CDK16Q00536 496 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 HSP90AA5PQ58FG0 334 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 ANXA8L1Q5VT79 327 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 TMEM71Q6P5X7 295 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 MED25Q71SY5 747 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 PEX11GQ96HA9 241 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 GNRHR2Q96P88 292 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 GOLPH3LQ9H4A5 285 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 SERHL2Q9H4I8 314 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 CHODLQ9H9P2 273 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 WASF3Q9UPY6 502 aa8.14□□□□□ -1.11
HMGB1-203ENST00000341423 SH3PXD2BA1X283 911 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 PATE3B3GLJ2 98 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 JRKO75564 520 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 PIAS2O75928 621 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 AGR2O95994 175 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 MMP2P08253 660 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 PNMA6AP0CW24 399 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 MC3RP41968 323 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 EMP3P54852 163 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 ST3GAL1Q11201 340 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 NPRL3Q12980 569 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 ABRAXAS2Q15018 415 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 SLC18A3Q16572 532 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 ARMC4Q5T2S8 1044 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 OR2A2Q6IF42 318 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 PRMT9Q6P2P2 845 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 TMEM26Q6ZUK4 368 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 NLRC3Q7RTR2 1065 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 LNX2Q8N448 690 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 SPPL2AQ8TCT8 520 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 TCF12Q99081 682 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 TMEM120AQ9BXJ8 343 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 DNAJB11Q9UBS4 358 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 CHD2O14647 1828 aaKnown RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 C2orf92A0A1B0GVN3 265 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 ZNF860A6NHJ4 632 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 ATP5F1P24539 256 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 AK4P27144 223 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 CRATP43155 626 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 GPR3P46089 330 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 OR11G2Q8NGC1 345 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 OR10T2Q8NGX3 314 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 DUSP15Q9H1R2 295 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 Q9H521 79 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 FKBPLQ9UIM3 349 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 NEU2Q9Y3R4 380 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 TTC28Q96AY4 2481 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 LCKP06239 509 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 HGFP14210 728 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 SSTR2P30874 369 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 ZMAT1Q5H9K5 638 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 CLNKQ7Z7G1 428 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 ADIPOR2Q86V24 386 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 CMTM7Q96FZ5 175 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 DEFB127Q9H1M4 99 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 NEUROG3Q9Y4Z2 214 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 A0A1W2PQC6 194 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 K7ESM1 405 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 TAF4O00268 1085 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 SLC25A17O43808 307 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 CLDN7O95471 211 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 PIGRP01833 764 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 HRGP04196 525 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 ITGA2BP08514 1039 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 PRKCHP24723 683 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 STARD6P59095 220 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 RPS14P62263 151 aaKnown RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 CSNK2A1P68400 391 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 CAMK2DQ13557 499 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 FGD3Q5JSP0 725 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 GLIS1Q8NBF1 620 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 PTCD2Q8WV60 388 aaKnown RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 WDR77Q9BQA1 342 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 TSPAN10Q9H1Z9 355 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 OXSMQ9NWU1 459 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 PPP1R14DQ9NXH3 145 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 FAM187AA6NFU0 413 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 ANXA2P2A6NMY6 339 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 ARHGEF33A8MVX0 844 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 LMO7DNF2Z398 122 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 PCDH17O14917 1159 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 EIF1AXP47813 144 aaKnown RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 PPIAP62937 165 aaKnown RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 CLPPQ16740 277 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 DPCR1Q3MIW9 517 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 NKAIN1Q4KMZ8 207 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 WASHC2DQ5SRD0 308 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 GPRC6AQ5T6X5 926 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 C1orf94Q6P1W5 598 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 PIWIL3Q7Z3Z3 882 aaKnown RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 FUKQ8N0W3 1084 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 FNDC5Q8NAU1 212 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 KDM1BQ8NB78 822 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 LIN37Q96GY3 246 aaPredicted RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 NPAS2Q99743 824 aa8.13□□□□□ -1.11
HMGB1-203ENST00000341423 GEMIN8Q9NWZ8 242 aaKnown RBP8.13□□□□□ -1.11
HMGB1-203ENST00000341423 MICAL3Q7RTP6 2002 aa8.12□□□□□ -1.11
HMGB1-203ENST00000341423 H3BML4 177 aa8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms