RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 C12orf76Q8N812 135 aaPredicted RBP11.57□□□□□ -0.56
USP1-201ENST00000339950 RHBDF1Q96CC6 855 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 Q96MT0 163 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 IGFLR1Q9H665 355 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 KIAA1522Q9P206 1035 aaPredicted RBP11.57□□□□□ -0.56
USP1-201ENST00000339950 LYVE1Q9Y5Y7 322 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 TTC34A8MYJ7 566 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 J3KTA2 159 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 SNX4O95219 450 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 SLC16A8O95907 504 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 IFI30P13284 250 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 GGT1P19440 569 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 HTR1BP28222 390 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 HTR1EP28566 365 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 HLCSP50747 726 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 BCAP31P51572 246 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 CTU2Q2VPK5 515 aaKnown RBP11.57□□□□□ -0.56
USP1-201ENST00000339950 PDCD4Q53EL6 469 aaKnown RBP11.57□□□□□ -0.56
USP1-201ENST00000339950 INO80DQ53TQ3 878 aaPredicted RBP11.57□□□□□ -0.56
USP1-201ENST00000339950 CARD16Q5EG05 197 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 AKAP14Q86UN6 197 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 ZNF740Q8NDX6 193 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 MRPL9Q9BYD2 267 aaKnown RBP11.57□□□□□ -0.56
USP1-201ENST00000339950 ASAH2Q9NR71 780 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 GPR83Q9NYM4 423 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 SLC25A37Q9NYZ2 338 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 VPS29Q9UBQ0 182 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 RANBP2P49792 3224 aaKnown RBP11.57□□□□□ -0.56
USP1-201ENST00000339950 TBC1D3BA6NDS4 549 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 TEX28O15482 410 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 GSTT2P0CG29 244 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 GSTT2BP0CG30 244 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 SDC1P18827 310 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 CLCN7P51798 805 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 RPP38P78345 283 aaKnown RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 VLDLRP98155 873 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 CSTF3Q12996 717 aaKnown RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 SLBPQ14493 270 aaKnown RBP eCLIP11.56□□□□□ -0.56
USP1-201ENST00000339950 CLEC12AQ5QGZ9 265 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 PTCHD4Q6ZW05 846 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 IGFN1Q86VF2 1251 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 PACRGLQ8N7B6 248 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 SETD9Q8NE22 299 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 OR5K1Q8NHB7 308 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 ASZ1Q8WWH4 475 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 ACDQ96AP0 544 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 CIDECQ96AQ7 238 aaPredicted RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 PHF21AQ96BD5 680 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 TCEAL4Q96EI5 215 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 FEVQ99581 238 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 CNPPD1Q9BV87 410 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 RAD18Q9NS91 495 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 IMP3Q9NV31 184 aaKnown RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 DNAJC27Q9NZQ0 273 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 SPATA7Q9P0W8 599 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 POU2F3Q9UKI9 436 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 TMCC3Q9ULS5 477 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 BTBD3Q9Y2F9 522 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 ARID2Q68CP9 1835 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 TRAV19A0A0A6YYK7 116 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 GSAPA4D1B5 854 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 DRGXA6NNA5 263 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 TULP3O75386 442 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 LEFTY1O75610 366 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 SCELO95171 688 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 BUD31P41223 144 aaPredicted RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 DOC2AQ14183 400 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 CXorf57Q6NSI4 855 aaKnown RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 AGTRAPQ6RW13 159 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 DLEU7Q6UYE1 221 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 FAM124AQ86V42 546 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 NAGSQ8N159 534 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 CELF5Q8N6W0 485 aaKnown RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 Q8N9G6 341 aaPredicted RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 PPCDCQ96CD2 204 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 TRMT61BQ9BVS5 477 aaKnown RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 DCSTAMPQ9H295 470 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 DOCK6Q96HP0 2047 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 ACOX3O15254 700 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 MATN4O95460 622 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 SLC26A3P40879 764 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 SLC19A1P41440 591 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 CTSCP53634 463 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 MANFP55145 182 aaKnown RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 TAS2R50P59544 299 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 RELAQ04206 551 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 HIST2H2ACQ16777 129 aaPredicted RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 HIST2H2AA3Q6FI13 130 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 THOC6Q86W42 341 aaKnown RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 DCP2Q8IU60 420 aaKnown RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 CHDHQ8NE62 594 aaPredicted RBP11.56□□□□□ -0.56
USP1-201ENST00000339950 RAB2BQ8WUD1 216 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 PPP1R14BQ96C90 147 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 KLHL20Q9Y2M5 609 aa11.56□□□□□ -0.56
USP1-201ENST00000339950 TRIM64CA6NLI5 447 aa11.55□□□□□ -0.56
USP1-201ENST00000339950 PCDH7O60245 1069 aa11.55□□□□□ -0.56
USP1-201ENST00000339950 TSPAN12O95859 305 aa11.55□□□□□ -0.56
USP1-201ENST00000339950 PTPN5P54829 565 aa11.55□□□□□ -0.56
USP1-201ENST00000339950 NEK5Q6P3R8 708 aa11.55□□□□□ -0.56
USP1-201ENST00000339950 RNF130Q86XS8 419 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms