RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 SMG8Q8ND04 991 aaKnown RBP12.52□□□□□ -0.41
USP47-202ENST00000339865 WDR77Q9BQA1 342 aaPredicted RBP12.52□□□□□ -0.41
USP47-202ENST00000339865 MTG2Q9H4K7 406 aa12.52□□□□□ -0.41
USP47-202ENST00000339865 DNAJB9Q9UBS3 223 aa12.52□□□□□ -0.41
USP47-202ENST00000339865 SLC27A5Q9Y2P5 690 aa12.52□□□□□ -0.41
USP47-202ENST00000339865 SCDO00767 359 aa12.52□□□□□ -0.41
USP47-202ENST00000339865 TNFRSF10BO14763 440 aa12.52□□□□□ -0.41
USP47-202ENST00000339865 HTR1AP08908 422 aa12.52□□□□□ -0.41
USP47-202ENST00000339865 RFX5P48382 616 aaPredicted RBP12.52□□□□□ -0.41
USP47-202ENST00000339865 NKX2-5P52952 324 aaPredicted RBP12.52□□□□□ -0.41
USP47-202ENST00000339865 ZC3H14Q6PJT7 736 aaKnown RBP12.52□□□□□ -0.41
USP47-202ENST00000339865 AGO3Q9H9G7 860 aaKnown RBP12.52□□□□□ -0.41
USP47-202ENST00000339865 ACAD8Q9UKU7 415 aa12.52□□□□□ -0.41
USP47-202ENST00000339865 PCDHB1Q9Y5F3 818 aa12.52□□□□□ -0.41
USP47-202ENST00000339865 CROCC2H7BZ55 1655 aa12.52□□□□□ -0.41
USP47-202ENST00000339865 OR2AG2A6NM03 316 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 DNM1LO00429 736 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 CREBL2O60519 120 aaPredicted RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 CHRNB1P11230 501 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 PPIGQ13427 754 aaKnown RBP eCLIP12.51□□□□□ -0.419e-6■■□□□ 12.8
USP47-202ENST00000339865 ZNF829Q3KNS6 432 aaPredicted RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 METTL3Q86U44 580 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 PRELID2Q8N945 189 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 TRMT10AQ8TBZ6 339 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 CPT1BQ92523 772 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 C3orf49Q96BT1 292 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 TMEM209Q96SK2 561 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 C12orf65Q9H3J6 166 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 ARGFXA6NJG6 315 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 NUPL2O15504 423 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 APOA2P02652 100 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 DSC3Q14574 896 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 GPR152Q8TDT2 470 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 RIT1Q92963 219 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 KATNBL1Q9H079 304 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 GCM1Q9NP62 436 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 SERTAD4Q9NUC0 356 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 ZNF521Q96K83 1311 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 FOXO6A8MYZ6 492 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 BLOC1S5-TXNDC5H3BN57 136 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 ARL6IP5O75915 188 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 RPLP2P05387 115 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 SRPRAP08240 638 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 AKR1C4P17516 323 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 HGSNATQ68CP4 663 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 NOXRED1Q6NXP6 359 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 ZNF574Q6ZN55 896 aaPredicted RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 SKA3Q8IX90 412 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 C4orf19Q8IY42 314 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 TMEM86AQ8N2M4 240 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 FIBCD1Q8N539 461 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 TRAPPC12Q8WVT3 735 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 NPLQ9BXD5 320 aaPredicted RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 PRRC2BQ5JSZ5 2229 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 A0A1W2PPK0 400 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 TLR4O00206 839 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 C8BP07358 591 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 CTBP2P56545 445 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 GTPBP8Q8N3Z3 284 aaPredicted RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 SLC25A44Q96H78 314 aaPredicted RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 GPR21Q99679 349 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 PLCXD1Q9NUJ7 323 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 NUFIP1Q9UHK0 495 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 GRIN2AQ12879 1464 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 NPIPA5E9PKD4 350 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 PIP5K1BO14986 540 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 SGCEO43556 437 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 RBBP9O75884 186 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 H2AFB2P0C5Z0 115 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 CD79BP40259 229 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 DPY19L3Q6ZPD9 716 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 CCDC71Q8IV32 467 aaPredicted RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 SLC30A8Q8IWU4 369 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 METTL4Q8N3J2 472 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 SLC44A1Q8WWI5 657 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 LIN28AQ9H9Z2 209 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 NPIPA1Q9UND3 350 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 ERBB2P04626 1255 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 MAPTP10636 758 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 ATP5A1P25705 553 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 NR4A2P43354 598 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 WNT3AP56704 352 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 EEF1A2Q05639 463 aaKnown RBP12.51□□□□□ -0.41
USP47-202ENST00000339865 LAPTM5Q13571 262 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 NIPAL3Q6P499 406 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 TMEM151BQ8IW70 566 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 TUBB1Q9H4B7 451 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 ASB7Q9H672 318 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 SERINC1Q9NRX5 453 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 GFOD1Q9NXC2 390 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 CD84Q9UIB8 345 aa12.51□□□□□ -0.41
USP47-202ENST00000339865 TEX51A0A1B0GUA7 166 aa12.5□□□□□ -0.41
USP47-202ENST00000339865 TLX2O43763 284 aaPredicted RBP12.5□□□□□ -0.41
USP47-202ENST00000339865 RAB27AP51159 221 aa12.5□□□□□ -0.41
USP47-202ENST00000339865 NCS1P62166 190 aa12.5□□□□□ -0.41
USP47-202ENST00000339865 SCARB2Q14108 478 aa12.5□□□□□ -0.41
USP47-202ENST00000339865 EXOC3L2Q2M3D2 409 aa12.5□□□□□ -0.41
USP47-202ENST00000339865 KHDC1LQ5JSQ8 128 aa12.5□□□□□ -0.41
USP47-202ENST00000339865 SH3RF1Q7Z6J0 888 aa12.5□□□□□ -0.41
USP47-202ENST00000339865 STYXQ8WUJ0 223 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms