RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 FEVQ99581 238 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 ZNF334Q9HCZ1 680 aaPredicted RBP12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 IL1RAPQ9NPH3 570 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 SERHLQ9NQF3 203 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 SLC25A13Q9UJS0 675 aa12.48□□□□□ -0.41
HMGCS1-201ENST00000325110 FZD6O60353 706 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 ADAM23O75077 832 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 CYP7B1O75881 506 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 TGFB1P01137 390 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 ACPPP15309 386 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 LHCGRP22888 699 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 CTSKP43235 329 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 MASP1P48740 699 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 CTF1Q16619 201 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 FAM26DQ5JW98 314 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 MACC1Q6ZN28 852 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 DDX53Q86TM3 631 aaKnown RBP12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 ALPK1Q96QP1 1244 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 PNMA8CA0A1B0GUJ8 204 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 SERPIND1P05546 499 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 ETFAP13804 333 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 ATP1B2P14415 290 aaPredicted RBP12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 RPS3P23396 243 aaKnown RBP eCLIP12.47□□□□□ -0.411e-11■■■□□ 15.6
HMGCS1-201ENST00000325110 SFSWAPQ12872 951 aaKnown RBP12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 CSTF3Q12996 717 aaKnown RBP12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 DOC2AQ14183 400 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 TIGD6Q17RP2 521 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 CCSMST1Q4G0I0 132 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 LRRC70Q7Z2Q7 622 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 C11orf96Q7Z7L8 435 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 ANKRD13BQ86YJ7 626 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 ASZ1Q8WWH4 475 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 FOPNLQ96NB1 174 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 TMEM121BQ9BXQ6 578 aaPredicted RBP12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 ALOXE3Q9BYJ1 711 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 FAM83DQ9H4H8 585 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 HMX1Q9NP08 348 aaPredicted RBP12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 RAD18Q9NS91 495 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 SCN4AP35499 1836 aa12.47□□□□□ -0.41
HMGCS1-201ENST00000325110 CNOT3O75175 753 aaKnown RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 AMD1P17707 334 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 AOAHP28039 575 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 ETV3P41162 512 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 MAPK8P45983 427 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 NKX2-5P52952 324 aaPredicted RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 CAP1Q01518 475 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 MAD2L1BPQ15013 274 aaPredicted RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 UGT8Q16880 541 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 ZNF284Q2VY69 593 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 LAIR2Q6ISS4 152 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 SLC8B1Q6J4K2 584 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 ZNF551Q7Z340 670 aaPredicted RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 TRMT11Q7Z4G4 463 aaKnown RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 THOC6Q86W42 341 aaKnown RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 TRAPPC5Q8IUR0 188 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 CYB5D2Q8WUJ1 264 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 CLP1Q92989 425 aaKnown RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 USP7Q93009 1102 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 IGSF21Q96ID5 467 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 TPK1Q9H3S4 243 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 GPR83Q9NYM4 423 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 BTBD3Q9Y2F9 522 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 TRIM64A6NGJ6 449 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 TTC36A6NLP5 189 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 KPNA3O00505 521 aaPredicted RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 CATP04040 527 aaKnown RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 C8GP07360 202 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 STSP08842 583 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 EPORP19235 508 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 NRIP1P48552 1158 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 SRSF11Q05519 484 aaKnown RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 ACOX1Q15067 660 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 RAVER1Q8IY67 606 aaKnown RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 NLGN4XQ8N0W4 816 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 NAGSQ8N159 534 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 C11orf65Q8NCR3 313 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 OR10G2Q8NGC3 310 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 WRAP53Q9BUR4 548 aaKnown RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 RIOK2Q9BVS4 552 aaKnown RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 OR51B5Q9H339 312 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 MAGIXQ9H6Y5 334 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 RNF167Q9H6Y7 350 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 MARCH7Q9H992 704 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 TRIM39Q9HCM9 518 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 NEUROG3Q9Y4Z2 214 aa12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 DICER1Q9UPY3 1922 aaKnown RBP12.46□□□□□ -0.41
HMGCS1-201ENST00000325110 TMEM202A6NGA9 273 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 M0QX08 132 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 PCDHGA12O60330 932 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 INHBBP09529 407 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 HNF4AP41235 474 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 CCSAPQ6IQ19 270 aaPredicted RBP12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 AGTRAPQ6RW13 159 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 OR8H2Q8N162 312 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 PJA1Q8NG27 643 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 DNASE1L2Q92874 299 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 FKBP10Q96AY3 582 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 IL4I1Q96RQ9 567 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 NEURL2Q9BR09 285 aa12.46□□□□□ -0.42
HMGCS1-201ENST00000325110 CCNB1IP1Q9NPC3 277 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms