RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 KIF18BQ86Y91 864 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 PQLC3Q8N755 202 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 KREMEN2Q8NCW0 462 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 ZNF486Q96H40 463 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 RPL10LQ96L21 214 aaKnown RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 FUNDC2Q9BWH2 189 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 BEX2Q9BXY8 128 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 MIR1-1HGQ9H1L0 117 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 ENAMQ9NRM1 1142 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 PHPT1Q9NRX4 125 aaPredicted RBP11.2□□□□□ -0.62
VPS39-201ENST00000318006 PCDH10Q9P2E7 1040 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 ARL5AQ9Y689 179 aa11.2□□□□□ -0.62
VPS39-201ENST00000318006 C5orf51A6NDU8 294 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 GNRH1P01148 92 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 RLN2P04090 185 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 EFNA1P20827 205 aaPredicted RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 SLC13A2Q13183 592 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 SCARB2Q14108 478 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 FAM76BQ5HYJ3 339 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 NCEH1Q6PIU2 408 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 DPY19L3Q6ZPD9 716 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 PHYKPLQ8IUZ5 450 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 IQCF2Q8IXL9 164 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 GOLM1Q8NBJ4 401 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 OR4C6Q8NH72 309 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 GEMIN6Q8WXD5 167 aaKnown RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 SIGLEC10Q96LC7 697 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 PEBP4Q96S96 227 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 OR51V1Q9H2C8 321 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 ADAM7Q9H2U9 754 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 IMP3Q9NV31 184 aaKnown RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 SMOXQ9NWM0 555 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 FBXL21Q9UKT6 434 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 CRYBG1Q9Y4K1 1723 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 OR2AG2A6NM03 316 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 WRBO00258 174 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 HMGN1P05114 100 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 MYF6P23409 242 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 GSTM2P28161 218 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 PPIGQ13427 754 aaKnown RBP eCLIP11.19□□□□□ -0.622e-6■■■■□ 20.6
VPS39-201ENST00000318006 PIGGQ5H8A4 983 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 ATCAYQ86WG3 371 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 CPA6Q8N4T0 437 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 ZNF675Q8TD23 568 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 EXOSC8Q96B26 276 aaKnown RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 SOX17Q9H6I2 414 aaPredicted RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 FLRT1Q9NZU1 646 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 GPN3Q9UHW5 284 aaPredicted RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 PCDHGB6Q9Y5F9 930 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 HS3ST4Q9Y661 456 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 KRBA1A5PL33 1030 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 GTPBP1O00178 669 aaKnown RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 RP2O75695 350 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 ENGP17813 658 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 KELP23276 732 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 RYKP34925 604 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 NSG1P42857 185 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 BTN3A2P78410 334 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 ZNF782Q6ZMW2 699 aaPredicted RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 ZNF367Q7RTV3 350 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 KBTBD6Q86V97 674 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TOR1AIP2Q8NFQ8 470 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 ABHD11Q8NFV4 315 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 OR13C4Q8NGS5 318 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 STOML3Q8TAV4 291 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 FATE1Q969F0 183 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 ACDQ96AP0 544 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TMEM80Q96HE8 168 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 IFT27Q9BW83 186 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 COMMD4Q9H0A8 199 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 RABL2BQ9UNT1 228 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 SCML2Q9UQR0 700 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 NHSL1Q5SYE7 1610 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 USP54Q70EL1 1684 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TBC1D3DA0A087WVF3 549 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TBC1D3IA0A087WXS9 549 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TBC1D3EA0A087X179 549 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TBC1D3KA0A087X1G2 549 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TBC1D3FA6NER0 549 aaPredicted RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 TBC1D3LB9A6J9 549 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TPST2O60704 377 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 APODP05090 189 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TBC1D3HP0C7X1 549 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 ITGB4P16144 1822 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 MAP2K4P45985 399 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 GALNT2Q10471 571 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 PMS2P3Q13401 168 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 UGT8Q16880 541 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TBC1D3GQ6DHY5 549 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TBC1D3CQ6IPX1 549 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 UGT2A3Q6UWM9 527 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TBC1D3Q8IZP1 549 aaPredicted RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 TRIM43Q96BQ3 446 aaPredicted RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 PRR11Q96HE9 360 aaPredicted RBP11.19□□□□□ -0.62
VPS39-201ENST00000318006 MFSD1Q9H3U5 465 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 TRPV4Q9HBA0 871 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 SMURF1Q9HCE7 757 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 GKN1Q9NS71 199 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 CD84Q9UIB8 345 aa11.19□□□□□ -0.62
VPS39-201ENST00000318006 PPIEQ9UNP9 301 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms